Uridine 3'-monophosphate (BioDeep_00000004678)

 

Secondary id: BioDeep_00001868809

human metabolite natural product


代谢物信息卡片


{[(2R,3S,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy}phosphonic acid

化学式: C9H13N2O9P (324.0359)
中文名称:
谱图信息: 最多检出来源 Homo sapiens(feces) 26.96%

分子结构信息

SMILES: C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)OP(=O)(O)O)O
InChI: InChI=1S/C9H13N2O9P/c12-3-4-7(20-21(16,17)18)6(14)8(19-4)11-2-1-5(13)10-9(11)15/h1-2,4,6-8,12,14H,3H2,(H,10,13,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

描述信息

Uridine 3-monophosphate (3-UMP) belongs to the class of compounds called pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups. Uridine 3-monophosphate has been identified in the human placenta (PMID: 32033212).
COVID info from PDB, Protein Data Bank
Corona-virus
Coronavirus
SARS-CoV-2
COVID-19
SARS-CoV
COVID19
SARS2
SARS

同义名列表

16 个代谢物同义名

{[(2R,3S,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy}phosphonic acid; Uridine 3’-(dihydrogen phosphate); uridine 3-(dihydrogen phosphate); Uridine 3-monophosphoric acid; disodium salt 3-uridylic acid; Uridine 3’-phosphoric acid; Uridine 3-phosphoric acid; Uridine 3’-monophosphate; Uridine 3-monophosphate; Uridine 3’-phosphate; Uridine 3-phosphate; 3-Uridylic acid; DTXSID70920423; 3’-UMP; 3-UMP; 3'-UMP



数据库引用编号

18 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(3)

BioCyc(0)

PlantCyc(0)

代谢反应

12 个相关的代谢反应过程信息。

Reactome(11)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(1)

PharmGKB(0)

17 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表
Cytoplasm 4 ANG, EMP2, PNPT1, SH2D1A
Peripheral membrane protein 1 PNPT1
Endoplasmic reticulum membrane 1 PNPT1
Nucleus 2 ANG, EMP2
cytosol 5 ANG, BMF, GYPA, PNPT1, SH2D1A
nucleoplasm 1 GYPA
Cell membrane 2 EMP2, GYPA
Multi-pass membrane protein 1 EMP2
Golgi apparatus membrane 1 EMP2
cell surface 1 EMP2
Golgi apparatus 1 EMP2
Golgi membrane 1 EMP2
growth cone 1 ANG
neuronal cell body 1 ANG
plasma membrane 3 BMF, EMP2, GYPA
Membrane 2 EMP2, GYPA
apical plasma membrane 1 EMP2
extracellular exosome 1 LYZ
extracellular space 2 ANG, LYZ
perinuclear region of cytoplasm 1 EMP2
mitochondrion 1 PNPT1
Single-pass type I membrane protein 1 GYPA
Secreted 1 ANG
extracellular region 2 ANG, LYZ
Single-pass membrane protein 1 GYPA
mitochondrial outer membrane 1 BMF
Mitochondrion matrix 1 PNPT1
mitochondrial matrix 1 PNPT1
actin cytoskeleton 1 ANG
cytoplasmic vesicle 1 EMP2
nucleolus 1 ANG
apical part of cell 1 EMP2
Apical cell membrane 1 EMP2
Cytoplasm, perinuclear region 1 EMP2
Membrane raft 1 EMP2
basement membrane 1 ANG
Mitochondrion intermembrane space 1 PNPT1
mitochondrial intermembrane space 1 PNPT1
Chromosome 1 ANG
Nucleus, nucleolus 1 ANG
myosin complex 1 BMF
Cytoplasm, Stress granule 1 ANG
cytoplasmic stress granule 1 ANG
specific granule lumen 1 LYZ
tertiary granule lumen 1 LYZ
endocytic vesicle 1 ANG
azurophil granule lumen 1 LYZ
ribosome 1 PNPT1
ankyrin-1 complex 1 GYPA
angiogenin-PRI complex 1 ANG
catalytic complex 1 PNPT1
mitochondrial degradosome 1 PNPT1


文献列表

  • M C Boffa, G A Boffa. A phospholipase A2 with anticoagulant activity. II. Inhibition of the phospholiped activity in coagulation. Biochimica et biophysica acta. 1976 May; 429(3):839-52. doi: 10.1016/0005-2744(76)90330-2. [PMID: 5143]