4-O-alpha-D-Galactopyranuronosyl-D-galacturonic acid (BioDeep_00000003371)

 

Secondary id: BioDeep_00001107008

human metabolite


代谢物信息卡片


6-[(2-carboxy-4,5,6-trihydroxyoxan-3-yl)oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid

化学式: C12H18O13 (370.0747378)
中文名称: 半乳糖醛酸
谱图信息: 最多检出来源 Homo sapiens(feces) 0.08%

分子结构信息

SMILES: C1(C(C(OC(C1O)OC2C(C(C(OC2C(=O)O)O)O)O)C(=O)O)O)O
InChI: InChI=1S/C12H18O13/c13-1-2(14)7(9(18)19)25-12(5(1)17)24-6-3(15)4(16)11(22)23-8(6)10(20)21/h1-8,11-17,22H,(H,18,19)(H,20,21)

描述信息

Prepd. from pectin by enzymic hydrolysis using yeast or mould pectinases or by acid hydrolysis. Sole or major repeating unit of the pectin class of polysaccharides.
Prepd. from pectin by enzymic hydrolysis using yeast or mould pectinases or by acid hydrolysis. Sole or major repeating unit of the pectin class of polysaccharides
KEIO_ID D100

同义名列表

14 个代谢物同义名

6-[(2-carboxy-4,5,6-trihydroxyoxan-3-yl)oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid; 6-[(2-Carboxy-4,5,6-trihydroxyoxan-3-yl)oxy]-3,4,5-trihydroxyoxane-2-carboxylate; O-(alpha-D-Galactopyranosyluronic acid)-(1-4)-alpha-D-galactopyranuronic acid; 4-O-alpha-D-Galactopyranuronosyl-D-galacturonic acid; 4-O-a-D-Galactopyranuronosyl-D-galacturonic acid; 4-O-Α-D-galactopyranuronosyl-D-galacturonic acid; 4-O-alpha-D-Galactopyranuronosyl-D-galacturonate; 4-O-a-D-Galactopyranuronosyl-D-galacturonate; 4-O-Α-D-galactopyranuronosyl-D-galacturonate; Digalacturonic acid, (D,alpha-D)-isomer; α-D-GalA-(1→4)-D-GalA; Sodium digalacturonate; Digalacturonic acid; Digalacturonate



数据库引用编号

19 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

1 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Qian Deng, Shi-Qi Li, Xiao-Bao Sun, De-Ying Gao, Nuo Li, Hui-En Zhang, Zheng-Guang Wang, Jia-Kun Wang, Qian Wang. Cloning, expression, and characterization of two pectate lyases isolated from the sheep rumen microbiome. Applied microbiology and biotechnology. 2023 Feb; 107(2-3):677-689. doi: 10.1007/s00253-022-12344-9. [PMID: 36572830]
  • Guangcai Ma, Wenyou Zhu, Yongjun Liu. QM/MM studies on the calcium-assisted β-elimination mechanism of pectate lyase from bacillus subtilis. Proteins. 2016 11; 84(11):1606-1615. doi: 10.1002/prot.25103. [PMID: 27447541]
  • Lisha Zhang, Harry Thiewes, Jan A L van Kan. The D-galacturonic acid catabolic pathway in Botrytis cinerea. Fungal genetics and biology : FG & B. 2011 Oct; 48(10):990-7. doi: 10.1016/j.fgb.2011.06.002. [PMID: 21683149]
  • V E Miamin, A G Pesniakevich, E A Nikolaĭchik, V A Prokulevich. [Genetic regulation of pathogenicity and virulence factors in bacteria Erwinia carotovora subsp. atroseptica: identification of kduD gene]. Genetika. 2004 Sep; 40(9):1187-93. doi: . [PMID: 15559145]
  • V Valmeekam, Y L Loh, M J San Francisco. Control of exuT activity for galacturonate transport by the negative regulator ExuR in Erwinia chrysanthemi EC16. Molecular plant-microbe interactions : MPMI. 2001 Jun; 14(6):816-20. doi: 10.1094/mpmi.2001.14.6.816. [PMID: 11386378]