Stercobilinogen (BioDeep_00000005952)
Secondary id: BioDeep_00001870789
human metabolite Endogenous
代谢物信息卡片
化学式: C33H48N4O6 (596.3574)
中文名称:
谱图信息:
最多检出来源 Homo sapiens(feces) 41.11%
分子结构信息
SMILES: CCC1C(=O)NC(Cc2[nH]c(Cc3[nH]c(CC4NC(=O)C(C)C4CC)c(C)c3CCC(=O)O)c(CCC(=O)O)c2C)C1C
InChI: InChI=1S/C33H48N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h16,19-21,26-27,34-35H,7-15H2,1-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)
描述信息
Stercobilinogen is a tetrapyrrole chemical compound that is the parent compound of stercobilin, the pigment that is responsible for the brown color of feces. Stercobilinogen is formed through the reduction of its parent compound uroblinogen. Urobilinogen is actually generated through the degradation of heme, the red pigment in haemoglobin and red blood cells (RBCs). RBCs have a life span of about 120 days. When the RBCs have reached the end of their useful lifespan, the cells are engulfed by macrophages and their constituents recycled or disposed of. Heme is broken down when the heme ring is opened by the enzyme known as heme oxygenase, which is found in the endoplasmic reticulum of the macrophages. The oxidation process produces the linear tetrapyrrole known as biliverdin along with ferric iron (Fe3+), and carbon monoxide (CO). In the next reaction, a second methylene group (located between rings III and IV of the porphyrin ring) is reduced by the enzyme known as biliverdin reductase, producing bilirubin. Bilirubin is significantly less extensively conjugated than biliverdin. This reduction causes a change in the color of the biliverdin molecule from blue-green (vert or verd for green) to yellow-red, which is the color of bilirubin (ruby or rubi for red). In plasma virtually all the bilirubin is tightly bound to plasma proteins, largely albumin, because it is only sparingly soluble in aqueous solutions at physiological pH. In the sinusoids unconjugated bilirubin dissociates from albumin, enters the liver cells across the cell membrane through non-ionic diffusion to the smooth endoplasmatic reticulum. In hepatocytes, bilirubin-UDP-glucuronyltransferase (bilirubin-UGT) adds 2 additional glucuronic acid molecules to bilirubin to produce the more water-soluble version of the molecule known as bilirubin diglucuronide. The bilirubin diglucuronide is transferred rapidly across the canalicular membrane into the bile canaliculi where it is then excreted as bile into the large intestine. The bilirubin is further degraded (reduced) by microbes present in the large intestine to form a colorless product known as urobilinogen. Urobilinogen that remains in the colon can either be reduced to stercobilinogen and finally oxidized to stercobilin, or it can be directly reduced to stercobilin. Stercobilinogen (aso known as L-urobilinogen) is closely related to two other compounds: mesobilirubinogen (also known as I-urobilinogen) and urobilinogen (also known as D-urobilinogen). Specifically, urobilinogen can be reduced to form mesobilirubinogen, and mesobilirubinogen can be further reduced to form stercobilinogen. Confusingly, however, all three of these compounds are frequently collectively referred to as "urobilinogens".
同义名列表
10 个代谢物同义名
3-(2-{[3-(2-carboxyethyl)-5-{[(2S,3R,4R)-4-ethyl-3-methyl-5-oxopyrrolidin-2-yl]methyl}-4-methyl-1H-pyrrol-2-yl]methyl}-5-{[(2S,3R,4R)-3-ethyl-4-methyl-5-oxopyrrolidin-2-yl]methyl}-4-methyl-1H-pyrrol-3-yl)propanoic acid; (2R,3R,4S,16S,17R,18R)-2,17-Diethyl-1,2,3,4,5,10,15,16,17,18,19,22,23,24-tetradecahydro-3,7,13,18-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoic acid; (2R,3R,4S,16S,17R,18R)-2,17-Diethyl-1,2,3,4,5,10,15,16,17,18,19,22,23,24-tetradecahydro-3,7,13,18-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoate; (-)-2,17-Diethyl-1,2,3,4,5,10,15,16,17,18,19,22,23,24-tetradecahydro-3,7,13,18-tetramethyl-1,19-dioxo-biline-8,12-dipropionic acid; Stercobilinogen ixalpha; (-)-Stercobilinogen; Stercobilinogen ixα; L-Stercobilinogen; Stercobilinogen; L-Urobilinogen
数据库引用编号
16 个数据库交叉引用编号
- ChEBI: CHEBI:36479
- ChEBI: CHEBI:6320
- KEGG: C05789
- PubChem: 9548718
- PubChem: 440783
- HMDB: HMDB0004157
- Metlin: METLIN58221
- Wikipedia: Stercobilinogen
- foodb: FDB112384
- chemspider: 7827641
- CAS: 17095-63-5
- PMhub: MS000018866
- PubChem: 8084
- 3DMET: B05113
- NIKKAJI: J37.259E
- RefMet: L-Urobilinogen
分类词条
相关代谢途径
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代谢反应
0 个相关的代谢反应过程信息。
Reactome(0)
BioCyc(0)
WikiPathways(0)
Plant Reactome(0)
INOH(0)
PlantCyc(0)
COVID-19 Disease Map(0)
PathBank(0)
PharmGKB(0)
1 个相关的物种来源信息
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:
- PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。
文献列表
- Libor Vítek, Filip Majer, Lucie Muchová, Jaroslav Zelenka, Alena Jirásková, Pavel Branný, Jirí Malina, Karel Ubik. Identification of bilirubin reduction products formed by Clostridium perfringens isolated from human neonatal fecal flora.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.
2006 Apr; 833(2):149-57. doi:
10.1016/j.jchromb.2006.01.032
. [PMID: 16504607] - E Gallo, P Pich, G Ricco, G Saglio, C Camaschella, U Mazza. The relationship between anemia, fecal stercobilinogen, erythrocyte survival, and globin synthesis in heterozygotes for beta-thalassemia.
Blood.
1975 Nov; 46(5):693-8. doi:
. [PMID: 1174704]
- J BERMAN. [Importance of quantitative determination of urinary and fecal porphyrins and stercobilinogen in liver diseases].
Ceskoslovenska gastroenterologie a vyziva.
1955 Mar; 9(1):25-31. doi:
. [PMID: 14379261]
- P T LOWRY, N R ZIEGLER, R CARDINAL, C J WATSON. The conversion of N15-labeled mesobilirubinogen to stercobilinogen by fecal bacteria.
The Journal of biological chemistry.
1954 Jun; 208(2):543-8. doi:
. [PMID: 13174565]