Isochorismic acid (BioDeep_00001868980)

Main id: BioDeep_00000004304

 

PANOMIX_OTCML-2023 Volatile Flavor Compounds natural product


代谢物信息卡片


Isochorismic acid

化学式: C10H10O6 (226.04773600000001)
中文名称: （5S，6S）-5-[（1-羧基乙烯基）氧]-6-羟基-1,3-环己二烯-1-羧酸
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: C=C(C(=O)O)OC1C=CC=C(C1O)C(=O)O
InChI: InChI=1S/C10H10O6/c1-5(9(12)13)16-7-4-2-3-6(8(7)11)10(14)15/h2-4,7-8,11H,1H2,(H,12,13)(H,14,15)/t7-,8-/m0/s1

描述信息

同义名列表

3 个代谢物同义名

Isochorismic acid; Isochorismate; Isochorismic acid



数据库引用编号

11 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

24 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Wei Li, Jinyu He, Xiuzhuo Wang, Matthew Ashline, Zirui Wu, Fengquan Liu, Zheng Qing Fu, Ming Chang. PBS3: a versatile player in and beyond salicylic acid biosynthesis in Arabidopsis. The New phytologist. 2023 01; 237(2):414-422. doi: 10.1111/nph.18558. [PMID: 36263689]
  • Amna Mhamdi. Here, There, and Everywhere: Plastid- and Nuclear-Localized WHIRLY1 Regulates Salicylic Acid Homeostasis during Developmental Senescence. Plant physiology. 2020 12; 184(4):1620-1621. doi: 10.1104/pp.20.01475. [PMID: 33277328]
  • Michael P Torrens-Spence, Anastassia Bobokalonova, Valentina Carballo, Christopher M Glinkerman, Tomáš Pluskal, Amber Shen, Jing-Ke Weng. PBS3 and EPS1 Complete Salicylic Acid Biosynthesis from Isochorismate in Arabidopsis. Molecular plant. 2019 12; 12(12):1577-1586. doi: 10.1016/j.molp.2019.11.005. [PMID: 31760159]
  • Dmitrij Rekhter, Daniel Lüdke, Yuli Ding, Kirstin Feussner, Krzysztof Zienkiewicz, Volker Lipka, Marcel Wiermer, Yuelin Zhang, Ivo Feussner. Isochorismate-derived biosynthesis of the plant stress hormone salicylic acid. Science (New York, N.Y.). 2019 08; 365(6452):498-502. doi: 10.1126/science.aaw1720. [PMID: 31371615]
  • Yingjie Zhou, Johan Memelink, Huub J M Linthorst. An E. coli biosensor for screening of cDNA libraries for isochorismate pyruvate lyase-encoding cDNAs. Molecular genetics and genomics : MGG. 2018 Oct; 293(5):1181-1190. doi: 10.1007/s00438-018-1450-5. [PMID: 29796759]
  • Chao Chen, Yonghua Zhang, Pan Ye, Xiaofeng Ma, Chaoxing Zheng, Genfa Zhang. ENO2 knock-out mutants in Arabidopsis modify the regulation of the gene expression response to NaCl stress. Molecular biology reports. 2018 Oct; 45(5):1331-1338. doi: 10.1007/s11033-018-4292-7. [PMID: 30120651]
  • Keith M Macaulay, Geraldine A Heath, Alessio Ciulli, Alex M Murphy, Chris Abell, John P Carr, Alison G Smith. The biochemical properties of the two Arabidopsis thaliana isochorismate synthases. The Biochemical journal. 2017 04; 474(10):1579-1590. doi: 10.1042/bcj20161069. [PMID: 28356402]
  • Xiaoyan Wang, Jiong Gao, Zheng Zhu, Xianxin Dong, Xiaolei Wang, Guodong Ren, Xin Zhou, Benke Kuai. TCP transcription factors are critical for the coordinated regulation of isochorismate synthase 1 expression in Arabidopsis thaliana. The Plant journal : for cell and molecular biology. 2015 Apr; 82(1):151-62. doi: 10.1111/tpj.12803. [PMID: 25702611]
  • Hongbo Liu, Xianghua Li, Jinghua Xiao, Shiping Wang. A convenient method for simultaneous quantification of multiple phytohormones and metabolites: application in study of rice-bacterium interaction. Plant methods. 2012 Jan; 8(1):2. doi: 10.1186/1746-4811-8-2. [PMID: 22243810]
  • Veselin Dimitrov Petrov, Frank Van Breusegem. Hydrogen peroxide-a central hub for information flow in plant cells. AoB PLANTS. 2012; 2012(?):pls014. doi: 10.1093/aobpla/pls014. [PMID: 22708052]
  • Janick Mathys, Kaat De Cremer, Pieter Timmermans, Stefan Van Kerckhove, Bart Lievens, Mieke Vanhaecke, Bruno P A Cammue, Barbara De Coninck. Genome-Wide Characterization of ISR Induced in Arabidopsis thaliana by Trichoderma hamatum T382 Against Botrytis cinerea Infection. Frontiers in plant science. 2012; 3(?):108. doi: 10.3389/fpls.2012.00108. [PMID: 22661981]
  • Marcel C van Verk, John F Bol, Huub J M Linthorst. WRKY transcription factors involved in activation of SA biosynthesis genes. BMC plant biology. 2011 May; 11(?):89. doi: 10.1186/1471-2229-11-89. [PMID: 21595875]
  • Yun Lee, Fang Chen, Lina Gallego-Giraldo, Richard A Dixon, Eberhard O Voit. Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis. PLoS computational biology. 2011 May; 7(5):e1002047. doi: 10.1371/journal.pcbi.1002047. [PMID: 21625579]
  • Takashi Kadono, Daniel Tran, Rafik Errakhi, Takuya Hiramatsu, Patrice Meimoun, Joël Briand, Mari Iwaya-Inoue, Tomonori Kawano, François Bouteau. Increased anion channel activity is an unavoidable event in ozone-induced programmed cell death. PloS one. 2010 Oct; 5(10):e13373. doi: 10.1371/journal.pone.0013373. [PMID: 20967217]
  • Michael Bartsch, Paweł Bednarek, Pedro D Vivancos, Bernd Schneider, Edda von Roepenack-Lahaye, Christine H Foyer, Erich Kombrink, Dierk Scheel, Jane E Parker. Accumulation of isochorismate-derived 2,3-dihydroxybenzoic 3-O-beta-D-xyloside in arabidopsis resistance to pathogens and ageing of leaves. The Journal of biological chemistry. 2010 Aug; 285(33):25654-65. doi: 10.1074/jbc.m109.092569. [PMID: 20538606]
  • Junli Huang, Min Gu, Zhibing Lai, Baofang Fan, Kai Shi, Yan-Hong Zhou, Jing-Quan Yu, Zhixiang Chen. Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress. Plant physiology. 2010 Aug; 153(4):1526-38. doi: 10.1104/pp.110.157370. [PMID: 20566705]
  • Sejir Chaouch, Guillaume Queval, Sandy Vanderauwera, Amna Mhamdi, Michaël Vandorpe, Mathilde Langlois-Meurinne, Frank Van Breusegem, Patrick Saindrenan, Graham Noctor. Peroxisomal hydrogen peroxide is coupled to biotic defense responses by ISOCHORISMATE SYNTHASE1 in a daylength-related manner. Plant physiology. 2010 Aug; 153(4):1692-705. doi: 10.1104/pp.110.153957. [PMID: 20543092]
  • Giordano Rampioni, Christian Pustelny, Matthew P Fletcher, Victoria J Wright, Mary Bruce, Kendra P Rumbaugh, Stephan Heeb, Miguel Cámara, Paul Williams. Transcriptomic analysis reveals a global alkyl-quinolone-independent regulatory role for PqsE in facilitating the environmental adaptation of Pseudomonas aeruginosa to plant and animal hosts. Environmental microbiology. 2010 Jun; 12(6):1659-73. doi: 10.1111/j.1462-2920.2010.02214.x. [PMID: 20406282]
  • Xudong Zhang, Sixue Chen, Zhonglin Mou. Nuclear localization of NPR1 is required for regulation of salicylate tolerance, isochorismate synthase 1 expression and salicylate accumulation in Arabidopsis. Journal of plant physiology. 2010 Jan; 167(2):144-8. doi: 10.1016/j.jplph.2009.08.002. [PMID: 19716624]
  • Zhixiang Chen, Zuyu Zheng, Junli Huang, Zhibing Lai, Baofang Fan. Biosynthesis of salicylic acid in plants. Plant signaling & behavior. 2009 Jun; 4(6):493-6. doi: 10.4161/psb.4.6.8392. [PMID: 19816125]
  • Rachel A Okrent, Matthew D Brooks, Mary C Wildermuth. Arabidopsis GH3.12 (PBS3) conjugates amino acids to 4-substituted benzoates and is inhibited by salicylate. The Journal of biological chemistry. 2009 Apr; 284(15):9742-54. doi: 10.1074/jbc.m806662200. [PMID: 19189963]
  • Maria Elizabeth Abreu, Sergi Munné-Bosch. Salicylic acid deficiency in NahG transgenic lines and sid2 mutants increases seed yield in the annual plant Arabidopsis thaliana. Journal of experimental botany. 2009; 60(4):1261-71. doi: 10.1093/jxb/ern363. [PMID: 19188277]
  • Wenfei Xiao, Hongbo Liu, Yu Li, Xianghua Li, Caiguo Xu, Manyuan Long, Shiping Wang. A rice gene of de novo origin negatively regulates pathogen-induced defense response. PloS one. 2009; 4(2):e4603. doi: 10.1371/journal.pone.0004603. [PMID: 19240804]
  • Christopher T Defraia, Eric A Schmelz, Zhonglin Mou. A rapid biosensor-based method for quantification of free and glucose-conjugated salicylic acid. Plant methods. 2008 Dec; 4(?):28. doi: 10.1186/1746-4811-4-28. [PMID: 19117519]
  • John R Paterson, Gwendoline Baxter, Jacob S Dreyer, John M Halket, Robert Flynn, James R Lawrence. Salicylic acid sans aspirin in animals and man: persistence in fasting and biosynthesis from benzoic acid. Journal of agricultural and food chemistry. 2008 Dec; 56(24):11648-52. doi: 10.1021/jf800974z. [PMID: 19053387]
  • Marie-Laure Rosso, Sylvie Chauvaux, Rodrigue Dessein, Caroline Laurans, Lionel Frangeul, Céline Lacroix, Angèle Schiavo, Marie-Agnès Dillies, Jeannine Foulon, Jean-Yves Coppée, Claudine Médigue, Elisabeth Carniel, Michel Simonet, Michaël Marceau. Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression. BMC microbiology. 2008 Dec; 8(?):211. doi: 10.1186/1471-2180-8-211. [PMID: 19055764]
  • Christophe Garcion, Antje Lohmann, Elisabeth Lamodière, Jérémy Catinot, Antony Buchala, Peter Doermann, Jean-Pierre Métraux. Characterization and biological function of the ISOCHORISMATE SYNTHASE2 gene of Arabidopsis. Plant physiology. 2008 Jul; 147(3):1279-87. doi: 10.1104/pp.108.119420. [PMID: 18451262]
  • Darren M Soanes, Intikhab Alam, Mike Cornell, Han Min Wong, Cornelia Hedeler, Norman W Paton, Magnus Rattray, Simon J Hubbard, Stephen G Oliver, Nicholas J Talbot. Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis. PloS one. 2008 Jun; 3(6):e2300. doi: 10.1371/journal.pone.0002300. [PMID: 18523684]
  • Hyun Uk Kim, Chloë van Oostende, Gilles J C Basset, John Browse. The AAE14 gene encodes the Arabidopsis o-succinylbenzoyl-CoA ligase that is essential for phylloquinone synthesis and photosystem-I function. The Plant journal : for cell and molecular biology. 2008 Apr; 54(2):272-83. doi: 10.1111/j.1365-313x.2008.03416.x. [PMID: 18208520]
  • Katherine G Zulak, Aalim M Weljie, Hans J Vogel, Peter J Facchini. Quantitative 1H NMR metabolomics reveals extensive metabolic reprogramming of primary and secondary metabolism in elicitor-treated opium poppy cell cultures. BMC plant biology. 2008 Jan; 8(?):5. doi: 10.1186/1471-2229-8-5. [PMID: 18211706]
  • Marcus A Strawn, Sharon K Marr, Kentaro Inoue, Noriko Inada, Chloe Zubieta, Mary C Wildermuth. Arabidopsis isochorismate synthase functional in pathogen-induced salicylate biosynthesis exhibits properties consistent with a role in diverse stress responses. The Journal of biological chemistry. 2007 Feb; 282(8):5919-33. doi: 10.1074/jbc.m605193200. [PMID: 17190832]
  • Marianne C Verberne, Kamonchanok Sansuk, John F Bol, Huub J M Linthorst, Robert Verpoorte. Vitamin K1 accumulation in tobacco plants overexpressing bacterial genes involved in the biosynthesis of salicylic acid. Journal of biotechnology. 2007 Jan; 128(1):72-9. doi: 10.1016/j.jbiotec.2006.09.005. [PMID: 17084477]
  • Daisuke Ogawa, Nobuyoshi Nakajima, Tomoharu Sano, Masanori Tamaoki, Mitsuko Aono, Akihiro Kubo, Machi Kanna, Motohide Ioki, Hiroshi Kamada, Hikaru Saji. Salicylic acid accumulation under O3 exposure is regulated by ethylene in tobacco plants. Plant & cell physiology. 2005 Jul; 46(7):1062-72. doi: 10.1093/pcp/pci118. [PMID: 15870097]
  • Sotirios E Tjamos, Emmanouil Flemetakis, Epaminondas J Paplomatas, Panagiotis Katinakis. Induction of resistance to Verticillium dahliae in Arabidopsis thaliana by the biocontrol agent K-165 and pathogenesis-related proteins gene expression. Molecular plant-microbe interactions : MPMI. 2005 Jun; 18(6):555-61. doi: 10.1094/mpmi-18-0555. [PMID: 15986925]
  • W E Durrant, X Dong. Systemic acquired resistance. Annual review of phytopathology. 2004; 42(?):185-209. doi: 10.1146/annurev.phyto.42.040803.140421. [PMID: 15283665]
  • Jyoti Shah. The salicylic acid loop in plant defense. Current opinion in plant biology. 2003 Aug; 6(4):365-71. doi: 10.1016/s1369-5266(03)00058-x. [PMID: 12873532]
  • Jean-Pierre Métraux. Recent breakthroughs in the study of salicylic acid biosynthesis. Trends in plant science. 2002 Aug; 7(8):332-4. doi: 10.1016/s1360-1385(02)02313-0. [PMID: 12167322]
  • F Mauch, B Mauch-Mani, C Gaille, B Kull, D Haas, C Reimmann. Manipulation of salicylate content in Arabidopsis thaliana by the expression of an engineered bacterial salicylate synthase. The Plant journal : for cell and molecular biology. 2001 Jan; 25(1):67-77. doi: 10.1046/j.1365-313x.2001.00940.x. [PMID: 11169183]