3-phosphoglycerate (BioDeep_00000270834)

 

Secondary id: BioDeep_00000001314, BioDeep_00000014379, BioDeep_00000405372

natural product PANOMIX_OTCML-2023


代谢物信息卡片


3-Phosphoglyceric acid

化学式: C3H7O7P (185.9929402)
中文名称:
谱图信息: 最多检出来源 Chinese Herbal Medicine(otcml) 0.6%

分子结构信息

SMILES: C(C(C(=O)O)O)OP(=O)(O)O
InChI: InChI=1S/C3H7O7P/c4-2(3(5)6)1-10-11(7,8)9/h2,4H,1H2,(H,5,6)(H2,7,8,9)

描述信息

A monophosphoglyceric acid having the phospho group at the 3-position. It is an intermediate in metabolic pathways like glycolysis and calvin cycle.

同义名列表

2 个代谢物同义名

3-Phosphoglyceric acid; 3-phosphoglycerate



数据库引用编号

25 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(1)

BioCyc(6)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

24 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Chung-I Li, Yu-Min Yeh, Yi-Shan Tsai, Tzu-Hsuan Huang, Meng-Ru Shen, Peng-Chan Lin. Controlling the confounding effect of metabolic gene expression to identify actual metabolite targets in microsatellite instability cancers. Human genomics. 2023 Mar; 17(1):18. doi: 10.1186/s40246-023-00465-9. [PMID: 36879264]
  • Rumi Itoyama, Noriko Yasuda-Yoshihara, Fumimasa Kitamura, Tadahito Yasuda, Luke Bu, Atsuko Yonemura, Tomoyuki Uchihara, Kota Arima, Xichen Hu, Zhang Jun, Yuya Okamoto, Takahiko Akiyama, Kohei Yamashita, Yosuke Nakao, Toshihiko Yusa, Yuki Kitano, Takaaki Higashi, Tatsunori Miyata, Katsunori Imai, Hiromitsu Hayashi, Yo-Ichi Yamashita, Takumi Mikawa, Hiroshi Kondoh, Hideo Baba, Takatsugu Ishimoto. Metabolic shift to serine biosynthesis through 3-PG accumulation and PHGDH induction promotes tumor growth in pancreatic cancer. Cancer letters. 2021 12; 523(?):29-42. doi: 10.1016/j.canlet.2021.09.007. [PMID: 34508795]
  • Pauline Duminil, Marlène Davanture, Céline Oury, Edouard Boex-Fontvieille, Guillaume Tcherkez, Michel Zivy, Michael Hodges, Nathalie Glab. Arabidopsis thaliana 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 activity requires serine 82 phosphorylation. The Plant journal : for cell and molecular biology. 2021 09; 107(5):1478-1489. doi: 10.1111/tpj.15395. [PMID: 34174129]
  • Lingyan Jiang, Peisheng Wang, Xiaorui Song, Huan Zhang, Shuangshuang Ma, Jingting Wang, Wanwu Li, Runxia Lv, Xiaoqian Liu, Shuai Ma, Jiaqi Yan, Haiyan Zhou, Di Huang, Zhihui Cheng, Chen Yang, Lu Feng, Lei Wang. Salmonella Typhimurium reprograms macrophage metabolism via T3SS effector SopE2 to promote intracellular replication and virulence. Nature communications. 2021 02; 12(1):879. doi: 10.1038/s41467-021-21186-4. [PMID: 33563986]
  • Muhammad Mazhar Fareed, Mohamed A El-Esawi, Enas M El-Ballat, Gaber El-Saber Batiha, Abdur Rauf, Fatma M El-Demerdash, Fahad A Alhumaydhi, Suliman A Alsagaby. In Silico Drug Screening Analysis against the Overexpression of PGAM1 Gene in Different Cancer Treatments. BioMed research international. 2021; 2021(?):5515692. doi: 10.1155/2021/5515692. [PMID: 34195264]
  • Sara Rosa-Téllez, Armand Djoro Anoman, María Flores-Tornero, Walid Toujani, Saleh Alseek, Alisdair R Fernie, Sergio G Nebauer, Jesús Muñoz-Bertomeu, Juan Segura, Roc Ros. Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth. Plant physiology. 2018 02; 176(2):1182-1198. doi: 10.1104/pp.17.01227. [PMID: 28951489]
  • Yongchan Lee, Tomohiro Nishizawa, Mizuki Takemoto, Kaoru Kumazaki, Keitaro Yamashita, Kunio Hirata, Ayumi Minoda, Satoru Nagatoishi, Kouhei Tsumoto, Ryuichiro Ishitani, Osamu Nureki. Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity. Nature plants. 2017 Oct; 3(10):825-832. doi: 10.1038/s41477-017-0022-8. [PMID: 28970497]
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  • Ming Yuan, Fei Xu, Shao-Dong Wang, Da-Wei Zhang, Zhong-Wei Zhang, Yang Cao, Xiao-Chao Xu, Ming-Hua Luo, Shu Yuan. A single leaf of Camellia oleifera has two types of carbon assimilation pathway, C(3) and crassulacean acid metabolism. Tree physiology. 2012 Feb; 32(2):188-99. doi: 10.1093/treephys/tps002. [PMID: 22337600]
  • Jessica Schmitz, Mark Aurel Schöttler, Stephan Krueger, Stefan Geimer, Anja Schneider, Tatjana Kleine, Dario Leister, Kirsten Bell, Ulf-Ingo Flügge, Rainer E Häusler. Defects in leaf carbohydrate metabolism compromise acclimation to high light and lead to a high chlorophyll fluorescence phenotype in Arabidopsis thaliana. BMC plant biology. 2012 Jan; 12(?):8. doi: 10.1186/1471-2229-12-8. [PMID: 22248311]
  • Yoichi Shimoda, Junkyu Han, Kiyokazu Kawada, Abderrazak Smaoui, Hiroko Isoda. Metabolomics analysis of Cistus monspeliensis leaf extract on energy metabolism activation in human intestinal cells. Journal of biomedicine & biotechnology. 2012; 2012(?):428514. doi: 10.1155/2012/428514. [PMID: 22523469]
  • Carolin A Kolmeder, Mark de Been, Janne Nikkilä, Ilja Ritamo, Jaana Mättö, Leena Valmu, Jarkko Salojärvi, Airi Palva, Anne Salonen, Willem M de Vos. Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions. PloS one. 2012; 7(1):e29913. doi: 10.1371/journal.pone.0029913. [PMID: 22279554]
  • Xing Fan, Li-Na Sha, Jian Zeng, Hou-Yang Kang, Hai-Qin Zhang, Xiao-Li Wang, Li Zhang, Rui-Wu Yang, Chun-Bang Ding, You-Liang Zheng, Yong-Hong Zhou. Evolutionary dynamics of the Pgk1 gene in the polyploid genus Kengyilia (Triticeae: Poaceae) and its diploid relatives. PloS one. 2012; 7(2):e31122. doi: 10.1371/journal.pone.0031122. [PMID: 22363562]
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  • Huawu Jiang, Pingzhi Wu, Sheng Zhang, Chi Song, Yaping Chen, Meiru Li, Yongxia Jia, Xiaohua Fang, Fan Chen, Guojiang Wu. Global analysis of gene expression profiles in developing physic nut (Jatropha curcas L.) seeds. PloS one. 2012; 7(5):e36522. doi: 10.1371/journal.pone.0036522. [PMID: 22574177]
  • Melisa Gualdron-López, Miia H Vapola, Ilkka J Miinalainen, J Kalervo Hiltunen, Paul A M Michels, Vasily D Antonenkov. Channel-forming activities in the glycosomal fraction from the bloodstream form of Trypanosoma brucei. PloS one. 2012; 7(4):e34530. doi: 10.1371/journal.pone.0034530. [PMID: 22506025]
  • Dorothee Girbig, Sergio Grimbs, Joachim Selbig. Systematic analysis of stability patterns in plant primary metabolism. PloS one. 2012; 7(4):e34686. doi: 10.1371/journal.pone.0034686. [PMID: 22514655]
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  • Daijun Xiang, Qing Xia, Dexi Chen, Xia Feng, Yan Zhao, Yan Liu, Huiyu Liao, Yanmin Liu, Ning Li, Huiping Yan. Detection of D-3-phosphoglycerate dehydrogenase autoantibodies in patients with autoimmune hepatitis: Clinical significance evaluation. Hepatology research : the official journal of the Japan Society of Hepatology. 2011 Sep; 41(9):867-76. doi: 10.1111/j.1872-034x.2011.00839.x. [PMID: 21707887]
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