NCBI Taxonomy: 1813
Amycolatopsis (ncbi_taxid: 1813)
found 216 associated metabolites at genus taxonomy rank level.
Ancestor: Pseudonocardiaceae
Child Taxonomies: Amycolatopsis azurea, Amycolatopsis lurida, Amycolatopsis alba, Amycolatopsis circi, Amycolatopsis nivea, Amycolatopsis flava, Amycolatopsis arida, Amycolatopsis orientalis, Amycolatopsis equina, Amycolatopsis rubida, Amycolatopsis ruanii, Amycolatopsis marina, Amycolatopsis bullii, environmental samples, Amycolatopsis eburnea, Amycolatopsis panacis, Amycolatopsis viridis, Amycolatopsis deserti, Amycolatopsis suaedae, Amycolatopsis mediterranei, Amycolatopsis lactamdurans, Amycolatopsis anabasis, Amycolatopsis xylanica, Amycolatopsis samaneae, Amycolatopsis stemonae, Amycolatopsis sacchari, Amycolatopsis helveola, Amycolatopsis camponoti, Amycolatopsis acidicola, Amycolatopsis granulosa, Amycolatopsis jejuensis, Amycolatopsis thermalba, Amycolatopsis bartoniae, Amycolatopsis albispora, Amycolatopsis iheyensis, Amycolatopsis dendrobii, Amycolatopsis plumensis, Amycolatopsis speibonae, Amycolatopsis cappadoca, Amycolatopsis sulphurea, Amycolatopsis nigrescens, Amycolatopsis magusensis, Amycolatopsis hippodromi, Amycolatopsis antarctica, Amycolatopsis acidiphila, Amycolatopsis pigmentata, Amycolatopsis vastitatis, Amycolatopsis pittospori, Amycolatopsis thermophila, Amycolatopsis niigatensis, Amycolatopsis decaplanina, Amycolatopsis balhimycina, Amycolatopsis regifaucium, Amycolatopsis endophytica, Amycolatopsis silviterrae, Amycolatopsis aidingensis, Amycolatopsis ultiminotia, Amycolatopsis acididurans, Amycolatopsis taiwanensis, Amycolatopsis jiguanensis, Amycolatopsis umgeniensis, Amycolatopsis echigonensis, Amycolatopsis tolypomycina, Amycolatopsis xuchangensis, Amycolatopsis albidoflavus, Amycolatopsis halotolerans, Amycolatopsis oliviviridis, Amycolatopsis rhabdoformis, Amycolatopsis jiangsuensis, Amycolatopsis pretoriensis, Amycolatopsis tucumanensis, Amycolatopsis rifamycinica, unclassified Amycolatopsis, Amycolatopsis coloradensis, Amycolatopsis thailandensis, Amycolatopsis australiensis, Amycolatopsis pithecellobii, Amycolatopsis rhizosphaerae, Amycolatopsis kentuckyensis, Amycolatopsis saalfeldensis, Amycolatopsis minnesotensis, Amycolatopsis dongchuanensis, Amycolatopsis alkalitolerans, Amycolatopsis vancoresmycina, Amycolatopsis japonica group, Amycolatopsis benzoatilytica, Amycolatopsis lexingtonensis, Amycolatopsis palatopharyngis, Amycolatopsis roodepoortensis, Amycolatopsis cihanbeyliensis, Amycolatopsis methanolica group
Vancomycin
Vancomycin is only found in individuals that have used or taken this drug. It is an antibacterial obtained from Streptomyces orientalis. It is a glycopeptide related to ristocetin that inhibits bacterial cell wall assembly and is toxic to kidneys and the inner ear. [PubChem]The bactericidal action of vancomycin results primarily from inhibition of cell-wall biosynthesis. Specifically, vancomycin prevents incorporation of N-acetylmuramic acid (NAM)- and N-acetylglucosamine (NAG)-peptide subunits from being incorporated into the peptidoglycan matrix; which forms the major structural component of Gram-positive cell walls. The large hydrophilic molecule is able to form hydrogen bond interactions with the terminal D-alanyl-D-alanine moieties of the NAM/NAG-peptides. Normally this is a five-point interaction. This binding of vancomycin to the D-Ala-D-Ala prevents the incorporation of the NAM/NAG-peptide subunits into the peptidoglycan matrix. In addition, vancomycin alters bacterial-cell-membrane permeability and RNA synthesis. There is no cross-resistance between vancomycin and other antibiotics. Vancomycin is not active in vitro against gram-negative bacilli, mycobacteria, or fungi. A - Alimentary tract and metabolism > A07 - Antidiarrheals, intestinal antiinflammatory/antiinfective agents > A07A - Intestinal antiinfectives > A07AA - Antibiotics J - Antiinfectives for systemic use > J01 - Antibacterials for systemic use > J01X - Other antibacterials > J01XA - Glycopeptide antibacterials S - Sensory organs > S01 - Ophthalmologicals > S01A - Antiinfectives > S01AA - Antibiotics C254 - Anti-Infective Agent > C258 - Antibiotic > C61101 - Glycopeptide Antibiotic D000890 - Anti-Infective Agents > D000900 - Anti-Bacterial Agents Vancomycin is an antibiotic for the treatment of bacterial infections.
rifamycin B
D000890 - Anti-Infective Agents > D000900 - Anti-Bacterial Agents > D012294 - Rifamycins
Rifamycin O
D000890 - Anti-Infective Agents > D000900 - Anti-Bacterial Agents > D012294 - Rifamycins
Foeniculoside X
Foeniculoside x is a member of the class of compounds known as tetracenequinones. Tetracenequinones are polyaromatic hydrocarbon derivatives containing a tetracyclic cycle made up of four linearly fused benzene rings, one of which bears two ketone groups at position 1 and 4. Foeniculoside x is practically insoluble (in water) and a very weakly acidic compound (based on its pKa). Foeniculoside x can be found in fennel, which makes foeniculoside x a potential biomarker for the consumption of this food product.
Tetrangomycin
An angucycline antibiotic that is 3,4-dihydrotetraphene-1,7,12(2H)-trione substituted by hydroxy groups at positions 3 and 8 and a methyl group at position 3 (the 3R stereoisomer) ring system. It is an antibiotic isolated from Streptomyces sp.
RifamycinS
D000890 - Anti-Infective Agents > D000900 - Anti-Bacterial Agents > D012294 - Rifamycins Rifamycin S, a quinone, is an antibiotic against Gram-positive bacteria (including MRSA). Rifamycin S is the oxidized forms of a reversible oxidation-reduction system involving two electrons. Rifamycin S generates reactive oxygen species (ROS) and inhibits microsomal lipid peroxidation. Rifamycin S can be used for tuberculosis and leprosy[1][2][3].
5-Methoxysalicylic acid
5-methoxysalicylic acid is a methoxysalicylic acid that is salicylic acid which is carrying a methoxy group at position 5. It has a role as a bacterial metabolite and a human urinary metabolite. 5-Methoxysalicylic acid is also known as 2-hydroxy-5-methoxybenzoate or 5-methoxy-2-hydroxybenzoate and belongs to the class of organic compounds known as m-methoxybenzoic acids and derivatives. These are benzoic acids in which the hydrogen atom at position 3 of the benzene ring is replaced by a methoxy group. Outside of the human body, 5-Methoxysalicylic acid has been detected, but not quantified in herbs and spices and tea. 5-methoxysalicylic acid is a methoxysalicylic acid that is salicylic acid which is carrying a methoxy group at position 5. It has a role as a bacterial metabolite and a human urinary metabolite. 5-Methoxysalicylic acid is a natural product found in Thalictrum fargesii, Amycolatopsis, and Conyza bonariensis with data available. D000893 - Anti-Inflammatory Agents > D000894 - Anti-Inflammatory Agents, Non-Steroidal > D012459 - Salicylates A methoxysalicylic acid that is salicylic acid which is carrying a methoxy group at position 5. Isolated from Primula veris (cowslip) 5-Methoxysalicylic acid (5-MeOSA) is a natural compound, used as a useful matrix in the MALDI MS analysis of oligonucleotides when combined with spermine[1].
Cetocycline
Ochracenomicin A
An angucycline antibiotic that is 3,4,4a,12b-tetrahydrotetraphene-1,7,12(2H)-trione substituted by hydroxy groups at positions 4a, 8 and 12b and a methyl group at position 3. It is isolated from the culture broth of Amycolatopsis sp.MJ950-89F4 and exhibits a broad spectrum of antibacterial potential.
5-Methoxysalicylic acid
D000893 - Anti-Inflammatory Agents > D000894 - Anti-Inflammatory Agents, Non-Steroidal > D012459 - Salicylates 5-Methoxysalicylic acid (5-MeOSA) is a natural compound, used as a useful matrix in the MALDI MS analysis of oligonucleotides when combined with spermine[1].
Vancomycin
A complex glycopeptide from Streptomyces orientalis. It inhibits a specific step in the synthesis of the peptidoglycan layer in the Gram-positive bacteria Staphylococcus aureus and Clostridium difficile. A - Alimentary tract and metabolism > A07 - Antidiarrheals, intestinal antiinflammatory/antiinfective agents > A07A - Intestinal antiinfectives > A07AA - Antibiotics J - Antiinfectives for systemic use > J01 - Antibacterials for systemic use > J01X - Other antibacterials > J01XA - Glycopeptide antibacterials S - Sensory organs > S01 - Ophthalmologicals > S01A - Antiinfectives > S01AA - Antibiotics C254 - Anti-Infective Agent > C258 - Antibiotic > C61101 - Glycopeptide Antibiotic D000890 - Anti-Infective Agents > D000900 - Anti-Bacterial Agents Vancomycin is an antibiotic for the treatment of bacterial infections.
5-Methoxysalicylate
D000893 - Anti-Inflammatory Agents > D000894 - Anti-Inflammatory Agents, Non-Steroidal > D012459 - Salicylates 5-Methoxysalicylic acid (5-MeOSA) is a natural compound, used as a useful matrix in the MALDI MS analysis of oligonucleotides when combined with spermine[1].