D-Arabinose (BioDeep_00000015259)

Main id: BioDeep_00000395838

Secondary id: BioDeep_00000412702, BioDeep_00000859612, BioDeep_00001871847

natural product PANOMIX_OTCML-2023

代谢物信息卡片

(2S,3R,4R)-2,3,4,5-tetrahydroxypentanal

化学式: C5H10O5 (150.052821)
中文名称: D-阿拉伯糖, 阿拉伯糖
谱图信息: 最多检出来源 Viridiplantae(plant) 0.75%

分子结构信息

SMILES: C(C(C(C(C=O)O)O)O)O
InChI: InChI=1/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5u/m1/s1

描述信息

CONFIDENCE standard compound; INTERNAL_ID 233
Arabinose is an endogenous metabolite.
Arabinose is an endogenous metabolite.
D-Arabinose, a monosaccharide, shows strong growth inhibition against the Caenorhabditis elegans with an IC50 of 7.5 mM[1].
D-Arabinose, a monosaccharide, shows strong growth inhibition against the Caenorhabditis elegans with an IC50 of 7.5 mM[1].
D-arabinose is an endogenous metabolite.
D-arabinose is an endogenous metabolite.

同义名列表

12 个代谢物同义名

(2S,3R,4R)-2,3,4,5-tetrahydroxypentanal; D(-)-Arabinonse; L-(+)-Ribose; D-Arabinose; (3S,4R,5R)-oxane-2,3,4,5-tetrol; β-D-(-)-Arabinose; D-Arabinopyranose; D-(-)-Arabinose; (±)?-?Arabinose; DL-?Arabinose; Arabinose; D-?Arabinose

数据库引用编号

25 个数据库交叉引用编号

ChEBI: CHEBI:46983
ChEBI: CHEBI:46994
KEGG: C00216
PubChem: 66308
PubChem: 6902
Metlin: METLIN65497
ChEMBL: CHEMBL500808
ChEMBL: CHEMBL1222249
CAS: 10323-20-3
CAS: 147-81-9
CAS: 28697-53-2
MoNA: RP023311
MoNA: PS019402
MoNA: PS019401
MoNA: PS019408
MoNA: PS019403
ChEBI: CHEBI:17108
PubChem: 3516
PDB-CCD: 64K
PDB-CCD: SEJ
3DMET: B04650
NIKKAJI: J15.056H
medchemexpress: HY-N2353
medchemexpress: HY-N7082
medchemexpress: HY-N0059

分类词条

代谢反应

5 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(2)

GDP-arabinose biosynthesis: D-glucose ⟶ D-arabinose
ascorbate biosynthesis: L-gulonate ⟶ H₂O + L-gulono-1,4-lactone

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(3)

Operon: Arabinose Activation: cAMP + cAMP-activated global transcriptional regulator CRP ⟶ cAMP+CAP
D-Arabinose Degradation I: Adenosine triphosphate + D-Ribulose ⟶ Adenosine monophosphate + D-Ribulose-1-phosphate + Hydrogen Ion
D-Arabinose Degradation I: Adenosine triphosphate + D-Ribulose ⟶ Adenosine monophosphate + D-Ribulose-1-phosphate + Hydrogen Ion

PharmGKB(0)

21 个相关的物种来源信息

3816 - Abrus Precatorius L.: -
130426 - Allium chinense: 10.1016/J.CARBPOL.2014.10.019
661339 - Aronia melanocarpa: 10.1111/J.1365-2621.1988.TB13577.X
107450 - Ascochyta medicaginicola: 10.1371/JOURNAL.PONE.0206641
3821 - Cajanus cajan: 10.1002/JSFA.2740500106
3483 - Cannabis sativa: 10.1021/NP50008A001
86864 - Codonopsis pilosula: 10.1248/BPB.31.1860
75585 - Elliottia paniculata: 10.1248/YAKUSHI1947.94.12_1634
4232 - Helianthus annuus: 10.1021/JF60197A017
1937595 - Himatanthus articulatus: 10.1590/1809-4392200331110
47085 - Medicago lupulina: 10.5586/ASBP.1984.048
3498 - Morus alba L.: -
1504338 - Poa huecu: 10.1021/NP50052A040
3760 - Prunus persica: 10.1016/S0031-9422(00)85491-6
157169 - Ramalina fraxinea: 10.5586/ASBP.1979.002
316894 - Romanoa: 10.1021/NP050401Y
4547 - Saccharum officinarum: 10.1016/S0021-9673(01)88498-3
189786 - Tamarix aphylla: 10.1055/S-0028-1099548
56539 - Telekia speciosa: 10.1007/BF00633415
2019959 - Thymus transcaucasicus: 10.1007/BF00575075
767879 - Vachellia tortuosa: 10.1016/S0031-9422(97)00478-0

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

文献列表

Arie Gruzman, Ofer Shamni, Moriya Ben Yakir, Daphna Sandovski, Anna Elgart, Evgenia Alpert, Guy Cohen, Amnon Hoffman, Yehoshua Katzhendler, Erol Cerasi, Shlomo Sasson. Novel D-xylose derivatives stimulate muscle glucose uptake by activating AMP-activated protein kinase alpha. Journal of medicinal chemistry. 2008 Dec; 51(24):8096-108. doi: 10.1021/jm8008713. [PMID: 19049348]