D-Fucose (BioDeep_00000014674)

 

Secondary id: BioDeep_00000400292, BioDeep_00000568723, BioDeep_00001869054

natural product human metabolite PANOMIX_OTCML-2023 Volatile Flavor Compounds


代谢物信息卡片


(2S,3R,4S,5R,6R)-6-methyloxane-2,3,4,5-tetrol

化学式: C6H12O5 (164.06847019999998)
中文名称: D-岩藻糖, (2R,3S,4S,5R)-2,3,4,5-四羟基己醛
谱图信息: 最多检出来源 Viridiplantae(plant) 0.48%

分子结构信息

SMILES: CC1C(C(C(C(O1)O)O)O)O
InChI: InChI=1/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3+,4+,5-,6?/m1/s1

描述信息

D-Fucose (CAS: 4164-09-4) is a hexose deoxy sugar. Hexoses are monosaccharides in which the sugar unit is a six-carbon containing moiety. D-Fucose is considered to be soluble (in water) and a very weak acidic compound.
Acquisition and generation of the data is financially supported in part by CREST/JST.
D-(+)-Fucose is a nonmetabolizable analogue of l-arabinose. D-(+)-Fucose prevents growth of Escherichia coli B/r on a mineral salts medium plus l-arabinose by inhibiting induction of the l-arabinose operon[1]. D-fucose is a potent inducer of beta-methylgalactoside permease (MGP)[2].

同义名列表

26 个代谢物同义名

(2S,3R,4S,5R,6R)-6-methyloxane-2,3,4,5-tetrol; WURCS=2.0/1,1,0/[a2112m-1a_1-5]/1/; 6-Deoxy-alpha-D-galactopyranose; 6-Deoxy-α-D-galactopyranose; 6-Deoxy-alpha-D-galactose; 6-Deoxy-D-galactopyranose; 6-Deoxy-α-D-galactose; alpha-D-Fucopyranose; 6-Deoxy-D-galactose; Α-D-fucopyranose; alpha-D-Fucose; D-Fucopyranose; alpha-D-Fucp; D-(+)-Fucose; alpha-D-Fuc; a-D-Fucose; Α-D-fucose; a-D-Fucp; L-Fucose; Rhodeose; Α-D-fucp; D-Fucose; a-D-Fuc; Α-D-fuc; 6-Deoxy-D-galactose; (2R,3S,4S,5R)-2,3,4,5-tetrahydroxyhexanal



数据库引用编号

26 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

2 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(1)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(1)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

14 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Bo Li, Fei Lu, Haijuan Nan, Yang Liu. Isolation and structural characterisation of okara polysaccharides. Molecules (Basel, Switzerland). 2012 Jan; 17(1):753-61. doi: 10.3390/molecules17010753. [PMID: 22245942]
  • Fábio S Mendonça, Raquel F Albuquerque, Joaquim Evêncio-Neto, Sílvio H Freitas, Renata G S Dória, Fabiana M Boabaid, David Driemeier, Dale R Gardner, Franklin Riet-Correa, Edson M Colodel. Alpha-mannosidosis in goats caused by the swainsonine-containing plant Ipomoea verbascoidea. Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 2012 Jan; 24(1):90-5. doi: 10.1177/1040638711425948. [PMID: 22362938]
  • Beatriz Fernández-Marín, Fátima Míguez, José María Becerril, José Ignacio García-Plazaola. Activation of violaxanthin cycle in darkness is a common response to different abiotic stresses: a case study in Pelvetia canaliculata. BMC plant biology. 2011 Dec; 11(?):181. doi: 10.1186/1471-2229-11-181. [PMID: 22269024]
  • Marcel Tutor Ale, Hiroko Maruyama, Hidekazu Tamauchi, Jørn D Mikkelsen, Anne S Meyer. Fucose-containing sulfated polysaccharides from brown seaweeds inhibit proliferation of melanoma cells and induce apoptosis by activation of caspase-3 in vitro. Marine drugs. 2011 Dec; 9(12):2605-21. doi: 10.3390/md9122605. [PMID: 22363242]
  • Thomas W Davies, Stuart R Jenkins, Rachel Kingham, Joseph Kenworthy, Stephen J Hawkins, Jan G Hiddink. Dominance, biomass and extinction resistance determine the consequences of biodiversity loss for multiple coastal ecosystem processes. PloS one. 2011; 6(12):e28362. doi: 10.1371/journal.pone.0028362. [PMID: 22163297]
  • Uma Ranjan Lal, Shailendra Mani Tripathi, Sanjay M Jachak, Kamlesh Kumar Bhutani, Inder Pal Singh. RP-HPLC analysis of Jirakadyarishta and chemical changes during fermentation. Natural product communications. 2010 Nov; 5(11):1767-70. doi: ". [PMID: 21213976]
  • Whitney E Hable, Peter E Hart. Signaling mechanisms in the establishment of plant and fucoid algal polarity. Molecular reproduction and development. 2010 Sep; 77(9):751-8. doi: 10.1002/mrd.21199. [PMID: 20803733]
  • Antonius J M Matzke, Thomas M Weiger, Marjori Matzke. Ion channels at the nucleus: electrophysiology meets the genome. Molecular plant. 2010 Jul; 3(4):642-52. doi: 10.1093/mp/ssq013. [PMID: 20410254]
  • Keisuke Nakajima, Takao Uchiumi, Takashi Okamoto. Positional relationship between the gamete fusion site and the first division plane in the rice zygote. Journal of experimental botany. 2010 Jun; 61(11):3101-5. doi: 10.1093/jxb/erq131. [PMID: 20462944]
  • Lee Koetzner, Gary Grover, Jamie Boulet, Henry I Jacoby. Plant-derived polysaccharide supplements inhibit dextran sulfate sodium-induced colitis in the rat. Digestive diseases and sciences. 2010 May; 55(5):1278-85. doi: 10.1007/s10620-009-0848-7. [PMID: 19513840]
  • Hong-Wei Xue, Xu Chen, Yu Mei. Function and regulation of phospholipid signalling in plants. The Biochemical journal. 2009 Jun; 421(2):145-56. doi: 10.1042/bj20090300. [PMID: 19552624]
  • Jan Maisch, Jindriska Fiserová, Lukás Fischer, Peter Nick. Tobacco Arp3 is localized to actin-nucleating sites in vivo. Journal of experimental botany. 2009; 60(2):603-14. doi: 10.1093/jxb/ern307. [PMID: 19129161]
  • Luis Cárdenas. New findings in the mechanisms regulating polar growth in root hair cells. Plant signaling & behavior. 2009 Jan; 4(1):4-8. doi: 10.4161/psb.4.1.7341. [PMID: 19568333]
  • Luis Cárdenas, Carmen Quinto. Reactive oxygen species (ROS) as early signals in root hair cells responding to rhizobial nodulation factors. Plant signaling & behavior. 2008 Dec; 3(12):1101-2. doi: 10.4161/psb.3.12.7004. [PMID: 19704506]
  • Rachel A Muzzy, Whitney E Hable. Rac1 function during fucoid development. Plant signaling & behavior. 2008 Sep; 3(9):717-9. doi: 10.4161/psb.3.9.6457. [PMID: 19704838]
  • Thorsten B H Reusch, Amelie S Veron, Christoph Preuss, January Weiner, Lothar Wissler, Alfred Beck, Sven Klages, Michael Kube, Richard Reinhardt, Erich Bornberg-Bauer. Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress. Marine biotechnology (New York, N.Y.). 2008 May; 10(3):297-309. doi: 10.1007/s10126-007-9065-6. [PMID: 18239962]
  • Chunsheng Jin, Friedrich Altmann, Richard Strasser, Lukas Mach, Matthias Schähs, Renate Kunert, Thomas Rademacher, Josef Glössl, Herta Steinkellner. A plant-derived human monoclonal antibody induces an anti-carbohydrate immune response in rabbits. Glycobiology. 2008 Mar; 18(3):235-41. doi: 10.1093/glycob/cwm137. [PMID: 18203810]
  • Nick T Peters, Kyle O Logan, Anne Catherine Miller, Darryl L Kropf. Phospholipase D signaling regulates microtubule organization in the fucoid alga Silvetia compressa. Plant & cell physiology. 2007 Dec; 48(12):1764-74. doi: 10.1093/pcp/pcm149. [PMID: 17967797]
  • Fabrice Homblé, Marc Léonetti. Emergence of symmetry breaking in fucoid zygotes. Trends in plant science. 2007 Jun; 12(6):253-9. doi: 10.1016/j.tplants.2007.04.007. [PMID: 17499009]
  • Jan Adam, Martina Pokorná, Charles Sabin, Edward P Mitchell, Anne Imberty, Michaela Wimmerová. Engineering of PA-IIL lectin from Pseudomonas aeruginosa - Unravelling the role of the specificity loop for sugar preference. BMC structural biology. 2007 Jun; 7(?):36. doi: 10.1186/1472-6807-7-36. [PMID: 17540045]
  • Nick T Peters, Darryl L Kropf. Kinesin-5 motors are required for organization of spindle microtubules in Silvetia compressa zygotes. BMC plant biology. 2006 Aug; 6(?):19. doi: 10.1186/1471-2229-6-19. [PMID: 16945151]
  • Marc Valls, Stéphane Genin, Christian Boucher. Integrated regulation of the type III secretion system and other virulence determinants in Ralstonia solanacearum. PLoS pathogens. 2006 Aug; 2(8):e82. doi: 10.1371/journal.ppat.0020082. [PMID: 16933989]
  • Simona Abba', Stefano Ghignone, Paola Bonfante. A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins. BMC genomics. 2006 Mar; 7(?):39. doi: 10.1186/1471-2164-7-39. [PMID: 16512918]
  • Rhett Hadley, Whitney E Hable, Darryl L Kropf. Polarization of the endomembrane system is an early event in fucoid zygote development. BMC plant biology. 2006 Feb; 6(?):5. doi: 10.1186/1471-2229-6-5. [PMID: 16504093]
  • Nikola Kostlánová, Edward P Mitchell, Hugues Lortat-Jacob, Stefan Oscarson, Martina Lahmann, Nechama Gilboa-Garber, Gérard Chambat, Michaela Wimmerová, Anne Imberty. The fucose-binding lectin from Ralstonia solanacearum. A new type of beta-propeller architecture formed by oligomerization and interacting with fucoside, fucosyllactose, and plant xyloglucan. The Journal of biological chemistry. 2005 Jul; 280(30):27839-49. doi: 10.1074/jbc.m505184200. [PMID: 15923179]
  • Ralph H Schaloske, Daniel F Lusche, Karen Bezares-Roder, Kathrin Happle, Dieter Malchow, Christina Schlatterer. Ca2+ regulation in the absence of the iplA gene product in Dictyostelium discoideum. BMC cell biology. 2005 Mar; 6(1):13. doi: 10.1186/1471-2121-6-13. [PMID: 15760480]
  • Mohamed Qaddoumi, Vincent H L Lee. Lectins as endocytic ligands: an assessment of lectin binding and uptake to rabbit conjunctival epithelial cells. Pharmaceutical research. 2004 Jul; 21(7):1160-6. doi: 10.1023/b:pham.0000033002.93967.5f. [PMID: 15290855]
  • Kenneth D Belanger, Aaron J Wyman, Michelle N Sudol, Sneh L Singla-Pareek, Ralph S Quatrano. A signal peptide secretion screen in Fucus distichus embryos reveals expression of glucanase, EGF domain-containing, and LRR receptor kinase-like polypeptides during asymmetric cell growth. Planta. 2003 Oct; 217(6):931-50. doi: 10.1007/s00425-003-1058-8. [PMID: 12836024]
  • Enid T González, Caitilyn Allen. Characterization of a Ralstonia solanacearum operon required for polygalacturonate degradation and uptake of galacturonic acid. Molecular plant-microbe interactions : MPMI. 2003 Jun; 16(6):536-44. doi: 10.1094/mpmi.2003.16.6.536. [PMID: 12795379]
  • Sherryl R Bisgrove, David C Henderson, Darryl L Kropf. Asymmetric division in fucoid zygotes is positioned by telophase nuclei. The Plant cell. 2003 Apr; 15(4):854-62. doi: 10.1105/tpc.009415. [PMID: 12671082]
  • Koji Yamada, Akiko Hamada, Fumiaki Kisa, Tomofumi Miyamoto, Ryuichi Higuchi. Constituents of Holothuroidea, 13. Structure of neuritogenic active ganglioside molecular species from the sea cucumber Stichopus chloronotus. Chemical & pharmaceutical bulletin. 2003 Jan; 51(1):46-52. doi: 10.1248/cpb.51.46. [PMID: 12520127]
  • Genadii B Borovskii, Irina V Stupnikova, Anna I Antipina, Svetlana V Vladimirova, Victor K Voinikov. Accumulation of dehydrin-like proteins in the mitochondria of cereals in response to cold, freezing, drought and ABA treatment. BMC plant biology. 2002 Jun; 2(?):5. doi: 10.1186/1471-2229-2-5. [PMID: 12057012]
  • F Corellou, C Brownlee, B Kloareg, F Y Bouget. Cell cycle-dependent control of polarised development by a cyclin-dependent kinase-like protein in the Fucus zygote. Development (Cambridge, England). 2001 Nov; 128(21):4383-92. doi: 10.1242/dev.128.21.4383. [PMID: 11684672]
  • K Fötisch, F Altmann, D Haustein, S Vieths. Involvement of carbohydrate epitopes in the IgE response of celery-allergic patients. International archives of allergy and immunology. 1999 Sep; 120(1):30-42. doi: 10.1159/000024217. [PMID: 10529586]
  • F A Neethling, E Koren, Y Ye, S V Richards, M Kujundzic, R Oriol, D K Cooper. Protection of pig kidney (PK15) cells from the cytotoxic effect of anti-pig antibodies by alpha-galactosyl oligosaccharides. Transplantation. 1994 Mar; 57(6):959-63. doi: 10.1097/00007890-199403270-00032. [PMID: 8154046]