D-Ribulose (BioDeep_00000405313)

   


代谢物信息卡片


erythro-2-Pentulose (9CI)

化学式: C5H10O5 (150.052821)
中文名称: D-木酮糖, D-核糖
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: C(C(C(C(=O)CO)O)O)O
InChI: InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h3,5-8,10H,1-2H2/t3-,5-/m1/s1

描述信息

The D-stereoisomer of ribulose.

同义名列表

3 个代谢物同义名

erythro-2-Pentulose (9CI); D-(−)-Ribulose; D-Ribulose



数据库引用编号

10 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(4)

PlantCyc(0)

代谢反应

11 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(9)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(2)

  • D-Arabinose Degradation I: Adenosine triphosphate + D-Ribulose ⟶ Adenosine monophosphate + D-Ribulose-1-phosphate + Hydrogen Ion
  • D-Arabinose Degradation I: Adenosine triphosphate + D-Ribulose ⟶ Adenosine monophosphate + D-Ribulose-1-phosphate + Hydrogen Ion

PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Jie Zhou, Suxian Xu, Hu Li, Huachao Xi, Wenbo Cheng, Chen Yang. A Ribulose-5-phosphate Shunt from the Calvin-Benson Cycle to Methylerythritol Phosphate Pathway for Enhancing Photosynthetic Terpenoid Production. ACS synthetic biology. 2024 Mar; 13(3):876-887. doi: 10.1021/acssynbio.3c00675. [PMID: 38362836]
  • Maria Meloni, Silvia Fanti, Daniele Tedesco, Libero Gurrieri, Paolo Trost, Simona Fermani, Stéphane D Lemaire, Mirko Zaffagnini, Julien Henri. Characterization of chloroplast ribulose-5-phosphate-3-epimerase from the microalga Chlamydomonas reinhardtii. Plant physiology. 2023 Dec; ?(?):. doi: 10.1093/plphys/kiad680. [PMID: 38134324]
  • Christine A Raines. Improving plant productivity by re-tuning the regeneration of RuBP in the Calvin-Benson-Bassham cycle. The New phytologist. 2022 10; 236(2):350-356. doi: 10.1111/nph.18394. [PMID: 35860861]
  • Philipp Keller, Michael A Reiter, Patrick Kiefer, Thomas Gassler, Lucas Hemmerle, Philipp Christen, Elad Noor, Julia A Vorholt. Generation of an Escherichia coli strain growing on methanol via the ribulose monophosphate cycle. Nature communications. 2022 09; 13(1):5243. doi: 10.1038/s41467-022-32744-9. [PMID: 36068201]
  • Laura H Gunn, Karin Valegård, Inger Andersson. A unique structural domain in Methanococcoides burtonii ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) acts as a small subunit mimic. The Journal of biological chemistry. 2017 04; 292(16):6838-6850. doi: 10.1074/jbc.m116.767145. [PMID: 28154188]
  • Girish Kumar Rasineni, Pek Chin Loh, Boon Hoe Lim. Characterization of Chlamydomonas Ribulose-1,5-bisphosphate carboxylase/oxygenase variants mutated at residues that are post-translationally modified. Biochimica et biophysica acta. General subjects. 2017 Feb; 1861(2):79-85. doi: 10.1016/j.bbagen.2016.10.027. [PMID: 27816753]
  • Yuan Xie, Mei Li, Wenrui Chang. Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana. PloS one. 2016; 11(5):e0156067. doi: 10.1371/journal.pone.0156067. [PMID: 27223615]
  • Lynn Ullmann-Zeunert, Mariana A Stanton, Nathalie Wielsch, Stefan Bartram, Christian Hummert, Aleš Svatoš, Ian T Baldwin, Karin Groten. Quantification of growth-defense trade-offs in a common currency: nitrogen required for phenolamide biosynthesis is not derived from ribulose-1,5-bisphosphate carboxylase/oxygenase turnover. The Plant journal : for cell and molecular biology. 2013 Aug; 75(3):417-429. doi: 10.1111/tpj.12210. [PMID: 23590461]
  • Tobias Link, Gertrud Lohaus, Ingrid Heiser, Kurt Mendgen, Matthias Hahn, Ralf T Voegele. Characterization of a novel NADP(+)-dependent D-arabitol dehydrogenase from the plant pathogen Uromyces fabae. The Biochemical journal. 2005 Jul; 389(Pt 2):289-95. doi: 10.1042/bj20050301. [PMID: 15796718]
  • J MAYAUDON, A A BENSON, M CALVIN. Ribulose-1, 5-diphosphate from and CO2 fixation by Tetragonia expansa leaves extract. Biochimica et biophysica acta. 1957 Feb; 23(2):342-51. doi: 10.1016/0006-3002(57)90337-2. [PMID: 13412730]
  • A WEISSBACH, B L HORECKER, J HURWITZ. The enzymatic formation of phosphoglyceric acid from ribulose diphosphate and carbon dioxide. The Journal of biological chemistry. 1956 Feb; 218(2):795-810. doi: ". [PMID: 13295231]
  • S FUTTERMAN, J H ROE. The identification of ribulose and L-xylulose in human and rat urine. The Journal of biological chemistry. 1955 Jul; 215(1):257-62. doi: 10.1016/s0021-9258(18)66033-8. [PMID: 14392159]