Dibenzothiophene (BioDeep_00000013239)

 

Secondary id: BioDeep_00000865694, BioDeep_00001867779

human metabolite PANOMIX_OTCML-2023 blood metabolite Volatile Flavor Compounds natural product


代谢物信息卡片


8-thiatricyclo[7.4.0.0²,⁷]trideca-1(9),2(7),3,5,10,12-hexaene

化学式: C12H8S (184.0346688)
中文名称: 二苯并噻吩
谱图信息: 最多检出来源 Homo sapiens(blood) 0.2%

分子结构信息

SMILES: C1=CC=C2C(=C1)C3=CC=CC=C3S2
InChI: InChI=1S/C12H8S/c1-3-7-11-9(5-1)10-6-2-4-8-12(10)13-11/h1-8H

描述信息

C78284 - Agent Affecting Integumentary System

同义名列表

11 个代谢物同义名

8-thiatricyclo[7.4.0.0²,⁷]trideca-1(9),2(7),3,5,10,12-hexaene; [1,1-Biphenyl]-2,2-diyl sulphide; [1,1-Biphenyl]-2,2-diyl sulfide; Diphenylene sulphide; Diphenylene sulfide; alpha-Thiafluorene; dibenzothiophene; Α-thiafluorene; 9-Thiafluorene; a-Thiafluorene; Dibenzothiophene



数据库引用编号

14 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

1 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(1)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

9 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Sana Parveen, Nasrin Akhtar, Teerasak E-Kobon, Richard Burchmore, Abdullah Ijaz Hussain, Kalsoom Akhtar. Biodesulfurization of organosulfur compounds by a trehalose biosurfactant producing Gordonia sp. isolated from crude oil contaminated soil. World journal of microbiology & biotechnology. 2024 Feb; 40(3):103. doi: 10.1007/s11274-024-03899-y. [PMID: 38372854]
  • Qiaofeng Ai, Lirong Gao, Di Huang, Jing Yang, Qiang Fu, Xuan Zheng, Yang Liu, Lin Qiao, Jiyuan Weng, Minghui Zheng. Non-target and target analysis to identify and characterize thiophenes in soil from an abandoned coking plant. Journal of hazardous materials. 2023 10; 460(?):132444. doi: 10.1016/j.jhazmat.2023.132444. [PMID: 37660621]
  • Javed Khan, Muhammad Ishtiaq Ali, Asif Jamal, Mushtaq Ahmad, Jahangir Khan Achakzai, Muhammad Zafar. Response of mixed bacterial culture towards dibenzothiophene desulfurization under the influence of surfactants and microscopically (SEM and TEM) characterized magnetic Fe3 O4 nanoparticles. Microscopy research and technique. 2022 Dec; 85(12):3838-3849. doi: 10.1002/jemt.24230. [PMID: 36111961]
  • Camila A Ortega Ramírez, Travers Ching, Brandon Yoza, Qing X Li. Glycerol-assisted degradation of dibenzothiophene by Paraburkholderia sp. C3 is associated with polyhydroxyalkanoate granulation. Chemosphere. 2022 Mar; 291(Pt 3):133054. doi: 10.1016/j.chemosphere.2021.133054. [PMID: 34838841]
  • Mark J Henderson, Kathleen A Trychta, Shyh-Ming Yang, Susanne Bäck, Adam Yasgar, Emily S Wires, Carina Danchik, Xiaokang Yan, Hideaki Yano, Lei Shi, Kuo-Jen Wu, Amy Q Wang, Dingyin Tao, Gergely Zahoránszky-Kőhalmi, Xin Hu, Xin Xu, David Maloney, Alexey V Zakharov, Ganesha Rai, Fumihiko Urano, Mikko Airavaara, Oksana Gavrilova, Ajit Jadhav, Yun Wang, Anton Simeonov, Brandon K Harvey. A target-agnostic screen identifies approved drugs to stabilize the endoplasmic reticulum-resident proteome. Cell reports. 2021 04; 35(4):109040. doi: 10.1016/j.celrep.2021.109040. [PMID: 33910017]
  • T Sar, Y Chen, Y Bai, B Liu, P Agarwal, B C Stark, M Y Akbas. Combining co-culturing of Paenibacillus strains and Vitreoscilla hemoglobin expression as a strategy to improve biodesulfurization. Letters in applied microbiology. 2021 Apr; 72(4):484-494. doi: 10.1111/lam.13440. [PMID: 33305461]
  • Tobie D Lee, Olivia W Lee, Kyle R Brimacombe, Lu Chen, Rajarshi Guha, Sabrina Lusvarghi, Bethilehem G Tebase, Carleen Klumpp-Thomas, Robert W Robey, Suresh V Ambudkar, Min Shen, Michael M Gottesman, Matthew D Hall. A High-Throughput Screen of a Library of Therapeutics Identifies Cytotoxic Substrates of P-glycoprotein. Molecular pharmacology. 2019 11; 96(5):629-640. doi: 10.1124/mol.119.115964. [PMID: 31515284]
  • Sailendra Nath Sarma, Jules M Blais, Hing Man Chan. Neurotoxicity of alkylated polycyclic aromatic compounds in human neuroblastoma cells. Journal of toxicology and environmental health. Part A. 2017; 80(5):285-300. doi: 10.1080/15287394.2017.1314840. [PMID: 28598261]
  • Hongping Li, Wenshuai Zhu, Yonghui Chang, Wei Jiang, Ming Zhang, Sheng Yin, Jiexiang Xia, Huaming Li. Theoretical investigation of the interaction between aromatic sulfur compounds and [BMIM](+)[FeCl4](-) ionic liquid in desulfurization: A novel charge transfer mechanism. Journal of molecular graphics & modelling. 2015 Jun; 59(?):40-9. doi: 10.1016/j.jmgm.2015.03.007. [PMID: 25900860]
  • C Ibacache-Quiroga, J Ojeda, G Espinoza-Vergara, P Olivero, M Cuellar, M A Dinamarca. The hydrocarbon-degrading marine bacterium Cobetia sp. strain MM1IDA2H-1 produces a biosurfactant that interferes with quorum sensing of fish pathogens by signal hijacking. Microbial biotechnology. 2013 Jul; 6(4):394-405. doi: 10.1111/1751-7915.12016. [PMID: 23279885]
  • Daniel J Warner, Hongming Chen, Louis-David Cantin, J Gerry Kenna, Simone Stahl, Clare L Walker, Tobias Noeske. Mitigating the inhibition of human bile salt export pump by drugs: opportunities provided by physicochemical property modulation, in silico modeling, and structural modification. Drug metabolism and disposition: the biological fate of chemicals. 2012 Dec; 40(12):2332-41. doi: 10.1124/dmd.112.047068. [PMID: 22961681]
  • Nasrin Akhtar, Muhammad A Ghauri, Munir A Anwar, Kalsoom Akhtar. Analysis of the dibenzothiophene metabolic pathway in a newly isolated Rhodococcus spp. FEMS microbiology letters. 2009 Nov; 301(1):95-102. doi: 10.1111/j.1574-6968.2009.01797.x. [PMID: 19824901]
  • Kennan Kellaris Salinero, Keith Keller, William S Feil, Helene Feil, Stephan Trong, Genevieve Di Bartolo, Alla Lapidus. Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation. BMC genomics. 2009 Aug; 10(?):351. doi: 10.1186/1471-2164-10-351. [PMID: 19650930]
  • E Lehndorff, L Schwark. Biomonitoring airborne parent and alkylated three-ring PAHs in the Greater Cologne Conurbation II: regional distribution patterns. Environmental pollution (Barking, Essex : 1987). 2009 May; 157(5):1706-13. doi: 10.1016/j.envpol.2008.12.006. [PMID: 19157662]
  • F Ansari, P Grigoriev, S Libor, I E Tothill, J J Ramsden. DBT degradation enhancement by decorating Rhodococcus erythropolis IGST8 with magnetic Fe3O4 nanoparticles. Biotechnology and bioengineering. 2009 Apr; 102(5):1505-12. doi: 10.1002/bit.22161. [PMID: 19012265]
  • E Lehndorff, L Schwark. Biomonitoring airborne parent and alkylated three-ring PAHs in the Greater Cologne Conurbation I: temporal accumulation patterns. Environmental pollution (Barking, Essex : 1987). 2009 Apr; 157(4):1323-31. doi: 10.1016/j.envpol.2008.11.037. [PMID: 19157663]
  • Jens Heilmann, Klaus G Heumann. Sulfur trace determination in petroleum products by isotope dilution ICP-MS using direct injection by thermal vaporization (TV-ICP-IDMS). Analytical and bioanalytical chemistry. 2009 Jan; 393(1):393-7. doi: 10.1007/s00216-008-2387-z. [PMID: 18825376]
  • Lisandra Cubero Herrera, J Stuart Grossert, Louis Ramaley. Quantitative aspects of and ionization mechanisms in positive-ion atmospheric pressure chemical ionization mass spectrometry. Journal of the American Society for Mass Spectrometry. 2008 Dec; 19(12):1926-41. doi: 10.1016/j.jasms.2008.07.016. [PMID: 18845448]
  • F Peng, Z Liu, L Wang, Z Shao. An oil-degrading bacterium: Rhodococcus erythropolis strain 3C-9 and its biosurfactants. Journal of applied microbiology. 2007 Jun; 102(6):1603-11. doi: 10.1111/j.1365-2672.2006.03267.x. [PMID: 17578426]
  • Sergei F Boulyga, Jens Heilmann, Klaus G Heumann. Isotope dilution ICP-MS with laser-assisted sample introduction for direct determination of sulfur in petroleum products. Analytical and bioanalytical chemistry. 2005 Aug; 382(8):1808-14. doi: 10.1007/s00216-005-3303-4. [PMID: 16052350]
  • John P Incardona, Tracy K Collier, Nathaniel L Scholz. Defects in cardiac function precede morphological abnormalities in fish embryos exposed to polycyclic aromatic hydrocarbons. Toxicology and applied pharmacology. 2004 Apr; 196(2):191-205. doi: 10.1016/j.taap.2003.11.026. [PMID: 15081266]
  • Minoru Ogasawara, Kyoko Tsuruta, Shinsuke Arao. Flame photometric detector for thin-layer chromatography. Journal of chromatography. A. 2002 Oct; 973(1-2):151-8. doi: 10.1016/s0021-9673(02)01117-2. [PMID: 12437173]
  • María Piedad Díaz, Kenneth G Boyd, Steve J W Grigson, J Grant Burgess. Biodegradation of crude oil across a wide range of salinities by an extremely halotolerant bacterial consortium MPD-M, immobilized onto polypropylene fibers. Biotechnology and bioengineering. 2002 Jul; 79(2):145-53. doi: 10.1002/bit.10318. [PMID: 12115430]
  • J Hellou, J Leonard, C Anstey. Dietary exposure of finfish to aromatic contaminants and tissue distribution. Archives of environmental contamination and toxicology. 2002 May; 42(4):470-6. doi: 10.1007/s00244-001-0038-x. [PMID: 11994789]
  • J D van Elsas, G F Duarte, A Keijzer-Wolters, E Smit. Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. Journal of microbiological methods. 2000 Dec; 43(2):133-51. doi: 10.1016/s0167-7012(00)00212-8. [PMID: 11121612]
  • T Stachyra, D Guillochon, S Pulvin, D Thomas. Hemoglobin, horseradish peroxidase, and heme-bovine serum albumin as biocatalyst for the oxidation of dibenzothiophene. Applied biochemistry and biotechnology. 1996 Jun; 59(3):231-44. doi: 10.1007/bf02783567. [PMID: 8702255]
  • M Ochman, B Klubek, J Boydstun, D Clark, S Nabe. Mineralization of S from dibenzothiophene, dibenzothiophene sulphone, and benzene sulphonic acid by soil isolates. Microbios. 1990; 63(255):79-91. doi: ". [PMID: 2259289]