(3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate (BioDeep_00000897979)
代谢物信息卡片
(3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate
化学式: C7H9O5- (173.045)
中文名称:
谱图信息:
最多检出来源 Homo sapiens(blood) 100%
分子结构信息
SMILES: C1C(C(C(C=C1C(=O)[O-])O)O)O
InChI: InChI=1S/C7H10O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,4-6,8-10H,2H2,(H,11,12)/p-1/t4-,5-,6-/m1/s1
相关代谢途径
Reactome(0)
BioCyc(12)
- superpathway of L-phenylalanine biosynthesis
- superpathway of aromatic amino acid biosynthesis
- chorismate biosynthesis I
- chorismate biosynthesis from 3-dehydroquinate
- superpathway of L-tyrosine biosynthesis
- superpathway of chorismate metabolism
- superpathway of L-tryptophan biosynthesis
- superpathway of aromatic compound degradation
- simple coumarins biosynthesis
- phenylpropanoid biosynthesis
- superpathway of aromatic compound degradation via 2-hydroxypentadienoate
- superpathway of aromatic compound degradation via 3-oxoadipate
PlantCyc(4)
代谢反应
9 个相关的代谢反应过程信息。
Reactome(0)
BioCyc(9)
- shikimate degradation I:
3-dehydroshikimate ⟶ H2O + protocatechuate - chorismate biosynthesis from 3-dehydroquinate:
NADP+ + shikimate ⟶ 3-dehydroshikimate + H+ + NADPH - chorismate biosynthesis II (archaea):
NADP+ + shikimate ⟶ 3-dehydroshikimate + H+ + NADPH - chorismate biosynthesis I:
ATP + shikimate ⟶ ADP + H+ + shikimate-3-phosphate - superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis:
glt + phenylpyruvate ⟶ 2-oxoglutarate + phe - superpathway of chorismate:
glt + phenylpyruvate ⟶ 2-oxoglutarate + phe - chorismate biosynthesis I:
ATP + shikimate ⟶ ADP + H+ + shikimate-3-phosphate - chorismate biosynthesis I:
ATP + shikimate ⟶ ADP + H+ + shikimate-3-phosphate - chorismate biosynthesis from 3-dehydroquinate:
ATP + shikimate ⟶ ADP + H+ + shikimate-3-phosphate
WikiPathways(0)
Plant Reactome(0)
INOH(0)
PlantCyc(0)
COVID-19 Disease Map(0)
PathBank(0)
PharmGKB(0)
0 个相关的物种来源信息
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：
- PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。
| 亚细胞结构定位 | 关联基因列表 |
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文献列表
- Noah P Winters, Eric K Wafula, Benjamin J Knollenberg, Tuomas Hämälä, Prakash R Timilsena, Melanie Perryman, Dapeng Zhang, Lena L Sheaffer, Craig A Praul, Paula E Ralph, Sarah Prewitt, Mariela E Leandro-Muñoz, Diego A Delgadillo-Duran, Naomi S Altman, Peter Tiffin, Siela N Maximova, Claude W dePamphilis, James H Marden, Mark J Guiltinan. A combination of conserved and diverged responses underlies Theobroma cacao's defense response to Phytophthora palmivora.
BMC biology.
2024 Feb; 22(1):38. doi:
10.1186/s12915-024-01831-2. [PMID: 38360697] - Dror Avisar, Shelly Azulay, Lorena Bombonato, Denise Carvalho, Heitor Dallapicolla, Carla de Souza, Anselmo Dos Santos, Tatiane Dias, Maria Paula Galan, Milton Galvao, José Mateus Gonsalves, Esteban Gonzales, Rodrigo Graça, Sivan Livne, Reginaldo Mafia, Alexandre Manoeli, Mike May, Thaís Regina Drezza Menezes, Ana Cristina Pinheiro, Antonio Porto, Carolina Rocha, Ariane Schafer, Barry Schafer, Edival Zauza, William Silva. Safety Assessment of the CP4 EPSPS and NPTII Proteins in Eucalyptus.
GM crops & food.
2023 Dec; 14(1):1-14. doi:
10.1080/21645698.2023.2222436. [PMID: 37334790] - Yongbo Yu, Jiajing He, Linghao Liu, Hongyan Zhao, Mengmeng Zhang, Jinghang Hong, Xiangnan Meng, Haiyan Fan. Characterization of caffeoyl shikimate esterase gene family identifies CsCSE5 as a positive regulator of Podosphaera xanthii and Corynespora cassiicola pathogen resistance in cucumber.
Plant cell reports.
2023 Dec; 42(12):1937-1950. doi:
10.1007/s00299-023-03074-x. [PMID: 37823975] - Meirong Gao, Yuxin Zhao, Zhanyi Yao, Qianhe Su, Payton Van Beek, Zengyi Shao. Xylose and shikimate transporters facilitates microbial consortium as a chassis for benzylisoquinoline alkaloid production.
Nature communications.
2023 Nov; 14(1):7797. doi:
10.1038/s41467-023-43049-w. [PMID: 38016984] - Lars H Kruse, Frederick G Sunstrum, Daniela Garcia, Guillermo López Pérez, Sharon Jancsik, Joerg Bohlmann, Sandra Irmisch. Improved production of the antidiabetic metabolite montbretin A in Nicotiana benthamiana: discovery, characterization, and use of Crocosmia shikimate shunt genes.
The Plant journal : for cell and molecular biology.
2023 Nov; ?(?):. doi:
10.1111/tpj.16528. [PMID: 37960967] - Vladislav V Yemelyanov, Roman K Puzanskiy, Maria F Shishova. Plant Life with and without Oxygen: A Metabolomics Approach.
International journal of molecular sciences.
2023 Nov; 24(22):. doi:
10.3390/ijms242216222. [PMID: 38003412] - Xiao-Xia Zhu, Wan-Qiu Liu, Zhao-Xia Shi, Huang-Yao Zhu, Si-Qi Fan, Jie Zhang, Wen-Yuan Liu, Li-Jun Xu, Qing-Jia Ren, Feng Feng, Jian Xu. Meroterpenoids with divers' rings systems from Phyllosticta capitalensis and their anti-inflammatory activity.
Phytochemistry.
2023 Nov; ?(?):113918. doi:
10.1016/j.phytochem.2023.113918. [PMID: 37952710] - Aurelio Ortiz, Estibaliz Sansinenea. Phenylpropanoid Derivatives and Their Role in Plants' Health and as antimicrobials.
Current microbiology.
2023 Oct; 80(12):380. doi:
10.1007/s00284-023-03502-x. [PMID: 37864088] - Mario Mutz, Dominic Kösters, Benedikt Wynands, Nick Wierckx, Jan Marienhagen. Microbial synthesis of the plant natural product precursor p-coumaric acid with Corynebacterium glutamicum.
Microbial cell factories.
2023 Oct; 22(1):209. doi:
10.1186/s12934-023-02222-y. [PMID: 37833813] - Lian Wang, Huijing Wang, Jianbin Chen, Minglong Hu, Xiaoyu Shan, Jingwen Zhou. Efficient Production of Chlorogenic Acid in Escherichia coli Via Modular Pathway and Cofactor Engineering.
Journal of agricultural and food chemistry.
2023 Oct; ?(?):. doi:
10.1021/acs.jafc.3c04419. [PMID: 37788431] - Sufang Zhang, Bo Wang, Qian Li, Wenkai Hui, Linjie Yang, Zhihua Wang, Wenjuan Zhang, Fengxia Yue, Nian Liu, Huiling Li, Fachuang Lu, Kewei Zhang, Qingyin Zeng, Ai-Min Wu. CRISPR/Cas9 mutated p-coumaroyl shikimate 3'-hydroxylase 3 gene in Populus tomentosa reveals lignin functioning on supporting tree upright.
International journal of biological macromolecules.
2023 Sep; ?(?):126762. doi:
10.1016/j.ijbiomac.2023.126762. [PMID: 37683750] - Luis Orduña, Antonio Santiago, David Navarro-Payá, Chen Zhang, Darren C J Wong, J Tomás Matus. Aggregated gene co-expression networks predict transcription factor regulatory landscapes in grapevine.
Journal of experimental botany.
2023 Sep; ?(?):. doi:
10.1093/jxb/erad344. [PMID: 37668374] - Cong Yin, Ding Tang, Xiaoyu Liu, Zihan Li, Yulin Xiang, Kaiming Gao, Heyu Li, Lin Yuan, Bisheng Huang, Juan Li. Transcriptome analysis reveals important regulatory genes and pathways for tuber color variation in Pinellia ternata (Thunb.) Breit.
Protoplasma.
2023 Sep; 260(5):1313-1325. doi:
10.1007/s00709-023-01845-7. [PMID: 36918417] - Zhen-Zhong Wu, Zhi-Wei Gan, You-Xian Zhang, Si-Bei Chen, Chun-Dan Gan, Kai Yang, Jin-Yan Yang. Transcriptomic and metabolomic perspectives for the growth of alfalfa (Medicago sativa L.) seedlings with the effect of vanadium exposure.
Chemosphere.
2023 Sep; 336(?):139222. doi:
10.1016/j.chemosphere.2023.139222. [PMID: 37343642] - Antonella Di Sotto, Silvia Di Giacomo. Plant Polyphenols and Human Health: Novel Findings for Future Therapeutic Developments.
Nutrients.
2023 Aug; 15(17):. doi:
10.3390/nu15173764. [PMID: 37686796] - Qiang Ding, Chao Ye. Microbial engineering for shikimate biosynthesis.
Enzyme and microbial technology.
2023 Aug; 170(?):110306. doi:
10.1016/j.enzmictec.2023.110306. [PMID: 37598506] - Chihiro Oda-Yamamizo, Nobutaka Mitsuda, Carsten Milkowski, Hideyuki Ito, Kentaro Ezura, Ko Tahara. Heterologous gene expression system for the production of hydrolyzable tannin intermediates in herbaceous model plants.
Journal of plant research.
2023 Aug; ?(?):. doi:
10.1007/s10265-023-01484-2. [PMID: 37526750] - Shujie Ma, Hualong Yu, Mingyu Wang, Tingru Cui, Yujing Zhao, Xinxin Zhang, Caixia Wang, Mengmeng Li, Lihui Zhang, Jingao Dong. Natural product drupacine acting on a novel herbicidal target shikimate dehydrogenase.
Pesticide biochemistry and physiology.
2023 Aug; 194(?):105480. doi:
10.1016/j.pestbp.2023.105480. [PMID: 37532346] - Minghua Jiang, Heng Guo, Qilin Wu, Xin Lu, Yating Zou, Quanyou Fu, Shuihao Chen, Lan Liu, Bo Peng, Senhua Chen. Anti-inflammatory acetylenic meroterpenoids from the ascidian-derived fungus Amphichorda felina SYSU-MS7908.
Bioorganic chemistry.
2023 Jul; 139(?):106715. doi:
10.1016/j.bioorg.2023.106715. [PMID: 37543015] - Jin Li, Jianli Fu, Cheng Yue, Yanzhe Shang, Bang-Ce Ye. Highly Efficient Biosynthesis of Protocatechuic Acid via Recombinant Pseudomonas putida KT2440.
Journal of agricultural and food chemistry.
2023 Jun; ?(?):. doi:
10.1021/acs.jafc.3c01511. [PMID: 37365996] - Ruochen Wang, Kaidong Liu, Bei Tang, Dan Su, Xiaoqing He, Heng Deng, Mengbo Wu, Mondher Bouzayen, Dotn Grierson, Mingchun Liu. The MADS-box gene TAGL1 regulates a ripening-associated SlDQD/SDH2 involved in flavonoid biosynthesis and resistance against Botrytis cinerea in postharvest tomato fruit.
The Plant journal : for cell and molecular biology.
2023 Jun; ?(?):. doi:
10.1111/tpj.16354. [PMID: 37326247] - Nadia Calabriso, Marika Massaro, Egeria Scoditti, Maria Annunziata Carluccio. Dietary Polyphenols and Their Role in Gut Health.
Nutrients.
2023 Jun; 15(12):. doi:
10.3390/nu15122650. [PMID: 37375554] - Peng Zheng, Jieyu Ge, Jiayi Ji, Jingling Zhong, Hongyu Chen, Daren Luo, Wei Li, Bo Bi, Yongjun Ma, Wanghui Tong, Leiqin Han, Siqi Ma, Yuqi Zhang, Jianping Wu, Yanqiu Zhao, Ronghui Pan, Pengxiang Fan, Mengzhu Lu, Hao Du. Metabolic engineering and mechanical investigation of enhanced plant autoluminescence.
Plant biotechnology journal.
2023 May; ?(?):. doi:
10.1111/pbi.14068. [PMID: 37155328] - Weiwei Wang, Jinliang Guo, Jiayang Ma, Zhulin Wang, Lining Zhang, Zixu Wang, Min Meng, Chao Zhang, Fengli Sun, Yajun Xi. Comprehensive Transcriptomic and Metabolic Profiling of Agrobacterium-tumefaciens-Infected Immature Wheat Embryos.
International journal of molecular sciences.
2023 May; 24(9):. doi:
10.3390/ijms24098449. [PMID: 37176157] - Ekaterina Shor, Jasmin Ravid, Elad Sharon, Oded Skaliter, Tania Masci, Alexander Vainstein. SCARECROW-like GRAS protein PES positively regulates petunia floral scent production.
Plant physiology.
2023 05; 192(1):409-425. doi:
10.1093/plphys/kiad081. [PMID: 36760164] - Sabah M'Rah, Ahmed Marichali, Yassine M'Rabet, Saber Chatti, Hervé Casabianca, Karim Hosni. Morphology, physiology, and biochemistry of zinc-stressed caraway plants.
Protoplasma.
2023 May; 260(3):853-868. doi:
10.1007/s00709-022-01818-2. [PMID: 36329347] - Joo Young Kim, Keun Ho Cho, Shea A Keene, Thomas A Colquhoun. Altered profile of floral volatiles and lignin content by down-regulation of Caffeoyl Shikimate Esterase in Petunia.
BMC plant biology.
2023 Apr; 23(1):210. doi:
10.1186/s12870-023-04203-0. [PMID: 37085749] - Julian Simon Thilo Kiefer, Eugen Bauer, Genta Okude, Takema Fukatsu, Martin Kaltenpoth, Tobias Engl. Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles.
The ISME journal.
2023 Apr; ?(?):. doi:
10.1038/s41396-023-01415-y. [PMID: 37085551] - Yoojin Chong, Bong-Gyu Kim, Yeo-Jin Park, Youri Yang, Shin-Won Lee, Youngshim Lee, Joong-Hoon Ahn. Production of Four Flavonoid C-Glucosides in Escherichia coli.
Journal of agricultural and food chemistry.
2023 Apr; 71(13):5302-5313. doi:
10.1021/acs.jafc.3c00297. [PMID: 36952620] - Zahra Ghorbanzadeh, Rasmieh Hamid, Feba Jacob, Mehrshad Zeinalabedini, Ghasem Hosseini Salekdeh, Mohammad Reza Ghaffari. Comparative metabolomics of root-tips reveals distinct metabolic pathways conferring drought tolerance in contrasting genotypes of rice.
BMC genomics.
2023 Mar; 24(1):152. doi:
10.1186/s12864-023-09246-z. [PMID: 36973662] - Fabian Hammerle, Luis Quirós-Guerrero, Jean-Luc Wolfender, Ursula Peintner, Bianka Siewert. Highlighting the Phototherapeutical Potential of Fungal Pigments in Various Fruiting Body Extracts with Informed Feature-Based Molecular Networking.
Microbial ecology.
2023 Mar; ?(?):. doi:
10.1007/s00248-023-02200-2. [PMID: 36947169] - Puja Ghosh, Aditya Banerjee, Aryadeep Roychoudhury. Dissecting the biochemical and molecular-genetic regulation of diverse metabolic pathways governing aroma formation in indigenous aromatic indica rice varieties.
Molecular biology reports.
2023 Mar; 50(3):2479-2500. doi:
10.1007/s11033-022-08227-x. [PMID: 36602705] - Yuqing Liu, Aiqi Li, Mengna Liang, Qin Zhang, Jiandong Wu. Overexpression of the maize genes ZmSKL1 and ZmSKL2 positively regulates drought stress tolerance in transgenic Arabidopsis.
Plant cell reports.
2023 Mar; 42(3):521-533. doi:
10.1007/s00299-022-02974-8. [PMID: 36585973] - Melanie Mindt, Lenny Ferrer, Dirk Bosch, Katarina Cankar, Volker F Wendisch. De novo tryptophanase-based indole production by metabolically engineered Corynebacterium glutamicum.
Applied microbiology and biotechnology.
2023 Feb; ?(?):. doi:
10.1007/s00253-023-12397-4. [PMID: 36786915] - Xinyu Lu, Zitong Yang, Wen Song, Jinlu Miao, Hanqing Zhao, Peiyun Ji, Tianli Li, Jierui Si, Zhiyuan Yin, Maofeng Jing, Danyu Shen, Daolong Dou. The Phytophthora sojae effector PsFYVE1 modulates immunity-related gene expression by targeting host RZ-1A protein.
Plant physiology.
2023 02; 191(2):925-945. doi:
10.1093/plphys/kiac552. [PMID: 36461945] - Tongjin Liu, Tingting Liu, Xiaohui Zhang, Jiangping Song, Yang Qiu, Wenlong Yang, Huixia Jia, Haiping Wang, Xixiang Li. Combined widely targeted metabolomics and transcriptomics analysis reveals differentially accumulated metabolites and the underlying molecular bases in fleshy taproots of distinct radish genotypes.
Plant physiology and biochemistry : PPB.
2023 Feb; 195(?):351-361. doi:
10.1016/j.plaphy.2023.01.028. [PMID: 36681065] - Xiaoyu Liu, Yu Han, Le Luo, Huitang Pan, Tangren Cheng, Qixiang Zhang. Multiomics analysis reveals the mechanisms underlying the different floral colors and fragrances of Rosa hybrida cultivars.
Plant physiology and biochemistry : PPB.
2023 Feb; 195(?):101-113. doi:
10.1016/j.plaphy.2022.12.028. [PMID: 36621304] - Hwi Seong Jeon, Eunjeong Jang, Jinwoo Kim, Seu Ha Kim, Myoung-Hoon Lee, Myung Hee Nam, Yuki Tobimatsu, Ohkmae K Park. Pathogen-induced autophagy regulates monolignol transport and lignin formation in plant immunity.
Autophagy.
2023 02; 19(2):597-615. doi:
10.1080/15548627.2022.2085496. [PMID: 35652914] - Kathlyn N Woolfson, Vladimir Zhurov, Tian Wu, Karina M Kaberi, Stephanie Wu, Mark A Bernards. Transcriptomic analysis of wound-healing in Solanum tuberosum (potato) tubers: Evidence for a stepwise induction of suberin-associated genes.
Phytochemistry.
2023 Feb; 206(?):113529. doi:
10.1016/j.phytochem.2022.113529. [PMID: 36473515] - Patricia Adu-Yeboah, Samuel Tetteh Lowor, Maame Adwoa Segbefia, Sampson Konlan, Prince Pobee. Physiological and growth responses of cacao to glyphosate exposure.
Journal of environmental science and health. Part. B, Pesticides, food contaminants, and agricultural wastes.
2023 Jan; ?(?):1-9. doi:
10.1080/03601234.2023.2169523. [PMID: 36708092] - Qian Nong, Mukesh Kumar Malviya, Manoj Kumar Solanki, Li Lin, Jinlan Xie, Zhanghong Mo, Zeping Wang, Xiupeng Song, Xin Huang, Changning Li, Yangrui Li. Integrated metabolomic and transcriptomic study unveils the gene regulatory mechanisms of sugarcane growth promotion during interaction with an endophytic nitrogen-fixing bacteria.
BMC plant biology.
2023 Jan; 23(1):54. doi:
10.1186/s12870-023-04065-6. [PMID: 36694111] - Tusheema Dutta, Tuyelee Das, Abilash Valsala Gopalakrishnan, Suchismita Chatterjee Saha, Mimosa Ghorai, Samapika Nandy, Manoj Kumar, Radha, Arabinda Ghosh, Nobendu Mukerjee, Abhijit Dey. Mangiferin: the miraculous xanthone with diverse pharmacological properties.
Naunyn-Schmiedeberg's archives of pharmacology.
2023 Jan; ?(?):. doi:
10.1007/s00210-022-02373-6. [PMID: 36656353] - Michael L Sullivan. Near-real time determination of BAHD acyl-coenzyme A transferase reaction rates and kinetic parameters using Ellman's reagent.
Methods in enzymology.
2023; 683(?):19-39. doi:
10.1016/bs.mie.2022.10.002. [PMID: 37087187] - Junwei Yuan, Shiwei Zhong, Yu Long, Jingling Guo, Yixun Yu, Juanxu Liu. Shikimate Kinase Plays Important Roles in Anthocyanin Synthesis in Petunia.
International journal of molecular sciences.
2022 Dec; 23(24):. doi:
10.3390/ijms232415964. [PMID: 36555606] - Chun-Fang Liu, Ni Yang, Rui-Min Teng, Jing-Wen Li, Yi Chen, Zhi-Hang Hu, Tong Li, Jing Zhuang. Exogenous methyl jasmonate and cytokinin antagonistically regulate lignin biosynthesis by mediating CsHCT expression in Camellia sinensis.
Protoplasma.
2022 Nov; ?(?):. doi:
10.1007/s00709-022-01820-8. [PMID: 36385311] - Naoya Kataoka, Mienosuke Matsutani, Kazunobu Matsushita, Toshiharu Yakushi. Stepwise metabolic engineering of Corynebacterium glutamicum for the production of phenylalanine.
The Journal of general and applied microbiology.
2022 Aug; ?(?):. doi:
10.2323/jgam.2022.08.002. [PMID: 35989300]
