21H-biline (BioDeep_00000847024)
代谢物信息卡片
21H-biline
化学式: C19H14N4 (298.1218404)
中文名称:
谱图信息:
最多检出来源 () 0%
分子结构信息
SMILES: C1=CC(=CC2=NC(=CC3=CC=C(N3)C=C4C=CC=N4)C=C2)N=C1
InChI: InChI=1S/C19H14N4/c1-3-14(20-9-1)11-16-5-7-18(22-16)13-19-8-6-17(23-19)12-15-4-2-10-21-15/h1-13,22H
相关代谢途径
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代谢反应
0 个相关的代谢反应过程信息。
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BioCyc(0)
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Plant Reactome(0)
INOH(0)
PlantCyc(0)
COVID-19 Disease Map(0)
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0 个相关的物种来源信息
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：
- PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。
文献列表
- Nathan C Rockwell, Shelley S Martin, J Clark Lagarias. Mechanistic insight into the photosensory versatility of DXCF cyanobacteriochromes.
Biochemistry.
2012 May; 51(17):3576-85. doi:
10.1021/bi300171s. [PMID: 22494320] - Rui Yang, Kaori Nishiyama, Ayumi Kamiya, Yutaka Ukaji, Katsuhiko Inomata, Tilman Lamparter. Assembly of synthetic locked phycocyanobilin derivatives with phytochrome in vitro and in vivo in Ceratodon purpureus and Arabidopsis.
The Plant cell.
2012 May; 24(5):1936-51. doi:
10.1105/tpc.111.094656. [PMID: 22582099] - Ivana Kraiselburd, Analía I Alet, María Laura Tondo, Silvana Petrocelli, Lucas D Daurelio, Jesica Monzón, Oscar A Ruiz, Aba Losi, Elena G Orellano. A LOV protein modulates the physiological attributes of Xanthomonas axonopodis pv. citri relevant for host plant colonization.
PloS one.
2012; 7(6):e38226. doi:
10.1371/journal.pone.0038226. [PMID: 22675525] - Yasunori Sato, Kenichi Harada, Motoko Sasaki, Takahiro Yasaka, Yasuni Nakanuma. Heat shock proteins 27 and 70 are potential biliary markers for the detection of cholangiocarcinoma.
The American journal of pathology.
2012 Jan; 180(1):123-30. doi:
10.1016/j.ajpath.2011.09.010. [PMID: 22051775] - Yasunori Sato, Xiang Shan Ren, Yasuni Nakanuma. Caroli's Disease: Current Knowledge of Its Biliary Pathogenesis Obtained from an Orthologous Rat Model.
International journal of hepatology.
2012; 2012(?):107945. doi:
10.1155/2012/107945. [PMID: 22007315] - Richard D Vierstra, Junrui Zhang. Phytochrome signaling: solving the Gordian knot with microbial relatives.
Trends in plant science.
2011 Aug; 16(8):417-26. doi:
10.1016/j.tplants.2011.05.011. [PMID: 21719341] - Angela Strambi, Bo Durbeej. Initial excited-state relaxation of the bilin chromophores of phytochromes: a computational study.
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.
2011 Apr; 10(4):569-79. doi:
10.1039/c0pp00307g. [PMID: 21253657] - Man-Ho Cho, Youngchul Yoo, Seong Hee Bhoo, Sang-Won Lee. Purification and characterization of a recombinant bacteriophytochrome of Xanthomonas oryzae pathovar oryzae.
The protein journal.
2011 Feb; 30(2):124-31. doi:
10.1007/s10930-011-9312-6. [PMID: 21318274] - Min Chen, Kai Wang, Liang Zhang, Cheng Li, Yongliang Yang. The discovery of putative urine markers for the specific detection of prostate tumor by integrative mining of public genomic profiles.
PloS one.
2011; 6(12):e28552. doi:
10.1371/journal.pone.0028552. [PMID: 22194848] - Cary Pirone, Jodie V Johnson, J Martin E Quirke, Horacio A Priestap, David Lee. Bilirubin present in diverse angiosperms.
AoB PLANTS.
2010; 2010(?):plq020. doi:
10.1093/aobpla/plq020. [PMID: 22476078] - Alberto Bertolini, Carlo Peresson, Elisa Petrussa, Enrico Braidot, Sabina Passamonti, Francesco Macrì, Angelo Vianello. Identification and localization of the bilitranslocase homologue in white grape berries (Vitis vinifera L.) during ripening.
Journal of experimental botany.
2009; 60(13):3861-71. doi:
10.1093/jxb/erp225. [PMID: 19596699] - Elise A Kikis, Yoshito Oka, Matthew E Hudson, Akira Nagatani, Peter H Quail. Residues clustered in the light-sensing knot of phytochrome B are necessary for conformer-specific binding to signaling partner PIF3.
PLoS genetics.
2009 Jan; 5(1):e1000352. doi:
10.1371/journal.pgen.1000352. [PMID: 19165330] - Shih-Long Tu, Hsiu-Chen Chen, Li-Wen Ku. Mechanistic studies of the phytochromobilin synthase HY2 from Arabidopsis.
The Journal of biological chemistry.
2008 Oct; 283(41):27555-27564. doi:
10.1074/jbc.m803761200. [PMID: 18658149] - Christian Bongards, Wolfgang Gärtner. Interactions between chromophore and protein in phytochrome identified by novel oxa-, thia- and carba-chromophores.
Photochemistry and photobiology.
2008 Sep; 84(5):1109-17. doi:
10.1111/j.1751-1097.2008.00319.x. [PMID: 18363618] - Yoshito Oka, Tomonao Matsushita, Nobuyoshi Mochizuki, Peter H Quail, Akira Nagatani. Mutant screen distinguishes between residues necessary for light-signal perception and signal transfer by phytochrome B.
PLoS genetics.
2008 Aug; 4(8):e1000158. doi:
10.1371/journal.pgen.1000158. [PMID: 18704165] - Kathrin Bolte, Oliver Kawach, Julia Prechtl, Nicole Gruenheit, Julius Nyalwidhe, Uwe-G Maier. Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta.
BMC plant biology.
2008 May; 8(?):56. doi:
10.1186/1471-2229-8-56. [PMID: 18485196] - Frances M Dupont. Metabolic pathways of the wheat (Triticum aestivum) endosperm amyloplast revealed by proteomics.
BMC plant biology.
2008 Apr; 8(?):39. doi:
10.1186/1471-2229-8-39. [PMID: 18419817] - Yi-shin Su, J Clark Lagarias. Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants.
The Plant cell.
2007 Jul; 19(7):2124-39. doi:
10.1105/tpc.107.051516. [PMID: 17660358] - Jeremiah R Wagner, Junrui Zhang, Joseph S Brunzelle, Richard D Vierstra, Katrina T Forest. High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution.
The Journal of biological chemistry.
2007 Apr; 282(16):12298-309. doi:
10.1074/jbc.m611824200. [PMID: 17322301] - Shizue Yoshihara, Takashi Shimada, Daisuke Matsuoka, Kazunori Zikihara, Takayuki Kohchi, Satoru Tokutomi. Reconstitution of blue-green reversible photoconversion of a cyanobacterial photoreceptor, PixJ1, in phycocyanobilin-producing Escherichia coli.
Biochemistry.
2006 Mar; 45(11):3775-84. doi:
10.1021/bi051983l. [PMID: 16533061] - Thomas J Emborg, Joseph M Walker, Bosl Noh, Richard D Vierstra. Multiple heme oxygenase family members contribute to the biosynthesis of the phytochrome chromophore in Arabidopsis.
Plant physiology.
2006 Mar; 140(3):856-68. doi:
10.1104/pp.105.074211. [PMID: 16428602] - Nathan C Rockwell, Yi-Shin Su, J Clark Lagarias. Phytochrome structure and signaling mechanisms.
Annual review of plant biology.
2006; 57(?):837-58. doi:
10.1146/annurev.arplant.56.032604.144208. [PMID: 16669784] - Allan C Froehlich, Bosl Noh, Richard D Vierstra, Jennifer Loros, Jay C Dunlap. Genetic and molecular analysis of phytochromes from the filamentous fungus Neurospora crassa.
Eukaryotic cell.
2005 Dec; 4(12):2140-52. doi:
10.1128/ec.4.12.2140-2152.2005. [PMID: 16339731] - Amanda J Fischer, Nathan C Rockwell, Abigail Y Jang, Lauren A Ernst, Alan S Waggoner, Yong Duan, Hongxing Lei, J Clark Lagarias. Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes.
Biochemistry.
2005 Nov; 44(46):15203-15. doi:
10.1021/bi051633z. [PMID: 16285723] - Jeremiah R Wagner, Joseph S Brunzelle, Katrina T Forest, Richard D Vierstra. A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome.
Nature.
2005 Nov; 438(7066):325-31. doi:
10.1038/nature04118. [PMID: 16292304] - Takuya Muramoto, Chitose Kami, Hideo Kataoka, Naoko Iwata, Philip J Linley, Keiko Mukougawa, Akiho Yokota, Takayuki Kohchi. The tomato photomorphogenetic mutant, aurea, is deficient in phytochromobilin synthase for phytochrome chromophore biosynthesis.
Plant & cell physiology.
2005 Apr; 46(4):661-5. doi:
10.1093/pcp/pci062. [PMID: 15695440] - Ronja Tasler, Tina Moises, Nicole Frankenberg-Dinkel. Biochemical and spectroscopic characterization of the bacterial phytochrome of Pseudomonas aeruginosa.
The FEBS journal.
2005 Apr; 272(8):1927-36. doi:
10.1111/j.1742-4658.2005.04623.x. [PMID: 15819886] - Dave Bridges, Marie E Fraser, Greg B G Moorhead. Cyclic nucleotide binding proteins in the Arabidopsis thaliana and Oryza sativa genomes.
BMC bioinformatics.
2005 Jan; 6(?):6. doi:
10.1186/1471-2105-6-6. [PMID: 15644130] - Benjamin Quest, Wolfgang Gärtner. Chromophore selectivity in bacterial phytochromes: dissecting the process of chromophore attachment.
European journal of biochemistry.
2004 Mar; 271(6):1117-26. doi:
10.1111/j.1432-1033.2004.04015.x. [PMID: 15009190] - Berthold Borucki, Harald Otto, Gregor Rottwinkel, Jonathan Hughes, Maarten P Heyn, Tilman Lamparter. Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism.
Biochemistry.
2003 Nov; 42(46):13684-97. doi:
10.1021/bi035511n. [PMID: 14622015] - Tilman Lamparter, Norbert Michael, Ombretta Caspani, Takeshi Miyata, Koji Shirai, Katsuhiko Inomata. Biliverdin binds covalently to agrobacterium phytochrome Agp1 via its ring A vinyl side chain.
The Journal of biological chemistry.
2003 Sep; 278(36):33786-92. doi:
10.1074/jbc.m305563200. [PMID: 12824166] - Nicole Frankenberg, J Clark Lagarias. Phycocyanobilin:ferredoxin oxidoreductase of Anabaena sp. PCC 7120. Biochemical and spectroscopic.
The Journal of biological chemistry.
2003 Mar; 278(11):9219-26. doi:
10.1074/jbc.m211643200. [PMID: 12514179] - Helena J M M Jorissen, Benjamin Quest, Ingo Lindner, Nicole Tandeau de Marsac, Wolfgang Gärtner. Phytochromes with noncovalently bound chromophores: the ability of apophytochromes to direct tetrapyrrole photoisomerization.
Photochemistry and photobiology.
2002 May; 75(5):554-9. doi:
10.1562/0031-8655(2002)075<0554:pwnbct>2.0.co;2. [PMID: 12017484] - Andreas Karwath, Ross D King. Homology induction: the use of machine learning to improve sequence similarity searches.
BMC bioinformatics.
2002 Apr; 3(?):11. doi:
10.1186/1471-2105-3-11. [PMID: 11972320] - Michael Oberhuber, Bernhard Kräutler. Breakdown of chlorophyll: electrochemical bilin reduction provides synthetic access to fluorescent chlorophyll catabolites.
Chembiochem : a European journal of chemical biology.
2002 Jan; 3(1):104-7. doi:
10.1002/1439-7633(20020104)3:1<104::aid-cbic104>3.0.co;2-r. [PMID: 17590961] - F T Landgraf, C Forreiter, A Hurtado Picó, T Lamparter, J Hughes. Recombinant holophytochrome in Escherichia coli.
FEBS letters.
2001 Nov; 508(3):459-62. doi:
10.1016/s0014-5793(01)02988-x. [PMID: 11728472] - T Lamparter, B Esteban, J Hughes. Phytochrome Cph1 from the cyanobacterium Synechocystis PCC6803. Purification, assembly, and quaternary structure.
European journal of biochemistry.
2001 Sep; 268(17):4720-30. doi:
10.1046/j.1432-1327.2001.02395.x. [PMID: 11532008] - M T McDowell, J C Lagarias. Purification and biochemical properties of phytochromobilin synthase from etiolated oat seedlings.
Plant physiology.
2001 Aug; 126(4):1546-54. doi:
10.1104/pp.126.4.1546. [PMID: 11500553] - M Doi, T Inage, Y Shioi. Chlorophyll degradation in a Chlamydomonas reinhardtii mutant: an accumulation of pyropheophorbide a by anaerobiosis.
Plant & cell physiology.
2001 May; 42(5):469-74. doi:
10.1093/pcp/pce057. [PMID: 11382812] - N Frankenberg, K Mukougawa, T Kohchi, J C Lagarias. Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms.
The Plant cell.
2001 Apr; 13(4):965-78. doi:
10.1105/tpc.13.4.965. [PMID: 11283349] - T Kohchi, K Mukougawa, N Frankenberg, M Masuda, A Yokota, J C Lagarias. The Arabidopsis HY2 gene encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase.
The Plant cell.
2001 Feb; 13(2):425-36. doi:
10.1105/tpc.13.2.425. [PMID: 11226195] - B L Montgomery, K A Franklin, M J Terry, B Thomas, S D Jackson, M W Crepeau, J C Lagarias. Biliverdin reductase-induced phytochrome chromophore deficiency in transgenic tobacco.
Plant physiology.
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