4-Methylsyringol (BioDeep_00000615806)
Main id: BioDeep_00000017736
PANOMIX_OTCML-2023 natural product
代谢物信息卡片
4-Methyl-2,6-dimethoxyphenol (4-methylsyringol)
化学式: C9H12O3 (168.0786402)
中文名称: 4-甲基愈创醇
谱图信息:
最多检出来源 () 0%
Reviewed
Last reviewed on 2024-08-21.
Cite this Page
4-Methylsyringol. BioDeep Database v3. PANOMIX ltd, a top metabolomics service provider from China.
https://query.biodeep.cn/s/4-methylsyringol (retrieved
2024-11-03) (BioDeep RN: BioDeep_00000615806). Licensed
under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
分子结构信息
SMILES: CC1=CC(=C(C(=C1)OC)O)OC
InChI: InChI=1S/C9H12O3/c1-6-4-7(11-2)9(10)8(5-6)12-3/h4-5,10H,1-3H3
描述信息
4-Methylsyringol is a natural product that can be isolated from hardwood[1].
4-Methylsyringol. CAS Common Chemistry. CAS, a division of the American Chemical Society, n.d. https://commonchemistry.cas.org/detail?cas_rn=6638-05-7 (retrieved 2024-08-21) (CAS RN: 6638-05-7). Licensed under the Attribution-Noncommercial 4.0 International License (CC BY-NC 4.0).
同义名列表
数据库引用编号
6 个数据库交叉引用编号
- ChEBI: CHEBI:172423
- PubChem: 240925
- Metlin: METLIN86420
- ChEMBL: CHEMBL205268
- CAS: 6638-05-7
- medchemexpress: HY-W100715
分类词条
相关代谢途径
Reactome(0)
BioCyc(0)
PlantCyc(0)
代谢反应
0 个相关的代谢反应过程信息。
Reactome(0)
BioCyc(0)
WikiPathways(0)
Plant Reactome(0)
INOH(0)
PlantCyc(0)
COVID-19 Disease Map(0)
PathBank(0)
PharmGKB(0)
1 个相关的物种来源信息
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：
- PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。
文献列表
- David Kelly, Ayalsew Zerihun, Davinder P Singh, Christiane Vitzthum von Eckstaedt, Mark Gibberd, Kliti Grice, Mark Downey. Exposure of grapes to smoke of vegetation with varying lignin composition and accretion of lignin derived putative smoke taint compounds in wine.
Food chemistry.
2012 Nov; 135(2):787-98. doi:
10.1016/j.foodchem.2012.05.036. [PMID: 22868160] - Christina Eynck, Ginette Séguin-Swartz, Wayne E Clarke, Isobel A P Parkin. Monolignol biosynthesis is associated with resistance to Sclerotinia sclerotiorum in Camelina sativa.
Molecular plant pathology.
2012 Oct; 13(8):887-99. doi:
10.1111/j.1364-3703.2012.00798.x. [PMID: 22487550] - Jack P Wang, Christopher M Shuford, Quanzi Li, Jina Song, Ying-Chung Lin, Ying-Hsuan Sun, Hsi-Chuan Chen, Cranos M Williams, David C Muddiman, Ronald R Sederoff, Vincent L Chiang. Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis.
Planta.
2012 Sep; 236(3):795-808. doi:
10.1007/s00425-012-1663-5. [PMID: 22628084] - Ana Gutiérrez, Jorge Rencoret, Edith M Cadena, Alejandro Rico, Dorothee Barth, José C del Río, Angel T Martínez. Demonstration of laccase-based removal of lignin from wood and non-wood plant feedstocks.
Bioresource technology.
2012 Sep; 119(?):114-22. doi:
10.1016/j.biortech.2012.05.112. [PMID: 22728191] - Heather D Coleman, Francisco M Cánovas, Huimin Man, Edward G Kirby, Shawn D Mansfield. Enhanced expression of glutamine synthetase (GS1a) confers altered fibre and wood chemistry in field grown hybrid poplar (Populus tremula X alba) (717-1B4).
Plant biotechnology journal.
2012 Sep; 10(7):883-9. doi:
10.1111/j.1467-7652.2012.00714.x. [PMID: 22672155] - Kaori Nakagawa, Arata Yoshinaga, Keiji Takabe. Anatomy and lignin distribution in reaction phloem fibres of several Japanese hardwoods.
Annals of botany.
2012 Sep; 110(4):897-904. doi:
10.1093/aob/mcs144. [PMID: 22778147] - Jason S Lupoi, Emily A Smith. Characterization of woody and herbaceous biomasses lignin composition with 1064 nm dispersive multichannel Raman spectroscopy.
Applied spectroscopy.
2012 Aug; 66(8):903-10. doi:
10.1366/12-06621. [PMID: 22800567] - Qiulin Yang, Jianbin Shi, Lu Lin, Junping Zhuang, Chunsheng Pang, Tujun Xie, Ying Liu. Structural characterization of lignin in the process of cooking of cornstalk with solid alkali and active oxygen.
Journal of agricultural and food chemistry.
2012 May; 60(18):4656-61. doi:
10.1021/jf3008663. [PMID: 22515597] - Landry Charlier, Karim Mazeau. Molecular modeling of the structural and dynamical properties of secondary plant cell walls: influence of lignin chemistry.
The journal of physical chemistry. B.
2012 Apr; 116(14):4163-74. doi:
10.1021/jp300395k. [PMID: 22429051] - José C del Río, Pepijn Prinsen, Jorge Rencoret, Lidia Nieto, Jesús Jiménez-Barbero, John Ralph, Angel T Martínez, Ana Gutiérrez. Structural characterization of the lignin in the cortex and pith of elephant grass (Pennisetum purpureum) stems.
Journal of agricultural and food chemistry.
2012 Apr; 60(14):3619-34. doi:
10.1021/jf300099g. [PMID: 22414389] - Ruohe Yin, Burkhard Messner, Theresa Faus-Kessler, Thomas Hoffmann, Wilfried Schwab, Mohammad-Reza Hajirezaei, Veronica von Saint Paul, Werner Heller, Anton R Schäffner. Feedback inhibition of the general phenylpropanoid and flavonol biosynthetic pathways upon a compromised flavonol-3-O-glycosylation.
Journal of experimental botany.
2012 Apr; 63(7):2465-78. doi:
10.1093/jxb/err416. [PMID: 22249996] - Yan-Wen Wang, Wen-Chao Wang, Shang-Hui Jin, Jun Wang, Bo Wang, Bing-Kai Hou. Over-expression of a putative poplar glycosyltransferase gene, PtGT1, in tobacco increases lignin content and causes early flowering.
Journal of experimental botany.
2012 Apr; 63(7):2799-808. doi:
10.1093/jxb/ers001. [PMID: 22268132] - Shawn D Mansfield, Kyu-Young Kang, Clint Chapple. Designed for deconstruction--poplar trees altered in cell wall lignification improve the efficacy of bioethanol production.
The New phytologist.
2012 Apr; 194(1):91-101. doi:
10.1111/j.1469-8137.2011.04031.x. [PMID: 22239166] - Debing Jing, Jinghua Wang. Controlling the simultaneous production of laccase and lignin peroxidase from Streptomyces cinnamomensis by medium formulation.
Biotechnology for biofuels.
2012 Mar; 5(1):15. doi:
10.1186/1754-6834-5-15. [PMID: 22429569] - Saunia Withers, Fachuang Lu, Hoon Kim, Yimin Zhu, John Ralph, Curtis G Wilkerson. Identification of grass-specific enzyme that acylates monolignols with p-coumarate.
The Journal of biological chemistry.
2012 Mar; 287(11):8347-55. doi:
10.1074/jbc.m111.284497. [PMID: 22267741] - Teresa Martínez-Cortés, Federico Pomar, José Manuel Espiñeira, Fuencisla Merino, Esther Novo-Uzal. Purification and kinetic characterization of two peroxidases of Selaginella martensii Spring. involved in lignification.
Plant physiology and biochemistry : PPB.
2012 Mar; 52(?):130-9. doi:
10.1016/j.plaphy.2011.12.008. [PMID: 22305076] - Kaori Saito, Yoko Watanabe, Manabu Shirakawa, Yasuyuki Matsushita, Takanori Imai, Takayoshi Koike, Yuzou Sano, Ryo Funada, Kazumi Fukazawa, Kazuhiko Fukushima. Direct mapping of morphological distribution of syringyl and guaiacyl lignin in the xylem of maple by time-of-flight secondary ion mass spectrometry.
The Plant journal : for cell and molecular biology.
2012 Feb; 69(3):542-52. doi:
10.1111/j.1365-313x.2011.04811.x. [PMID: 21978273] - Jun Shigeto, Yoshitaka Itoh, Yuji Tsutsumi, Ryuichiro Kondo. Identification of Tyr74 and Tyr177 as substrate oxidation sites in cationic cell wall-bound peroxidase from Populus alba L.
The FEBS journal.
2012 Jan; 279(2):348-57. doi:
10.1111/j.1742-4658.2011.08429.x. [PMID: 22099451] - Zakir Hossain, Lisa Amyot, Brian McGarvey, Margaret Gruber, Jinwook Jung, Abdelali Hannoufa. The translation elongation factor eEF-1Bβ1 is involved in cell wall biosynthesis and plant development in Arabidopsis thaliana.
PloS one.
2012; 7(1):e30425. doi:
10.1371/journal.pone.0030425. [PMID: 22272350] - Jesper Harholt, Iben Sørensen, Jonatan Fangel, Alison Roberts, William G T Willats, Henrik Vibe Scheller, Bent Larsen Petersen, Jo Ann Banks, Peter Ulvskov. The glycosyltransferase repertoire of the spikemoss Selaginella moellendorffii and a comparative study of its cell wall.
PloS one.
2012; 7(5):e35846. doi:
10.1371/journal.pone.0035846. [PMID: 22567114] - Pubudu P Handakumbura, Samuel P Hazen. Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana.
Frontiers in plant science.
2012; 3(?):74. doi:
10.3389/fpls.2012.00074. [PMID: 22639662] - Yoshiyuki Ogata, Eisuke Chikayama, Yusuke Morioka, R Craig Everroad, Amiu Shino, Akihiro Matsushima, Hideaki Haruna, Shigeharu Moriya, Tetsuro Toyoda, Jun Kikuchi. ECOMICS: a web-based toolkit for investigating the biomolecular web in ecosystems using a trans-omics approach.
PloS one.
2012; 7(2):e30263. doi:
10.1371/journal.pone.0030263. [PMID: 22319563] - Ilga Porth, Björn Hamberger, Richard White, Kermit Ritland. Defense mechanisms against herbivory in Picea: sequence evolution and expression regulation of gene family members in the phenylpropanoid pathway.
BMC genomics.
2011 Dec; 12(?):608. doi:
10.1186/1471-2164-12-608. [PMID: 22177423] - Abdellah Barakate, Jennifer Stephens, Alison Goldie, William N Hunter, David Marshall, Robert D Hancock, Catherine Lapierre, Kris Morreel, Wout Boerjan, Claire Halpin. Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco.
The Plant cell.
2011 Dec; 23(12):4492-506. doi:
10.1105/tpc.111.089037. [PMID: 22158465] - S Prashant, M Srilakshmi Sunita, S Pramod, Ranadheer K Gupta, S Anil Kumar, S Rao Karumanchi, S K Rawal, P B Kavi Kishor. Down-regulation of Leucaena leucocephala cinnamoyl CoA reductase (LlCCR) gene induces significant changes in phenotype, soluble phenolic pools and lignin in transgenic tobacco.
Plant cell reports.
2011 Dec; 30(12):2215-31. doi:
10.1007/s00299-011-1127-6. [PMID: 21847621] - Li Xu, Longfu Zhu, Lili Tu, Linlin Liu, Daojun Yuan, Li Jin, Lu Long, Xianlong Zhang. Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry.
Journal of experimental botany.
2011 Nov; 62(15):5607-21. doi:
10.1093/jxb/err245. [PMID: 21862479] - Rogelio Santiago, Ana Butrón, Pedro Revilla, Rosa Ana Malvar. Is the basal area of maize internodes involved in borer resistance?.
BMC plant biology.
2011 Oct; 11(?):137. doi:
10.1186/1471-2229-11-137. [PMID: 21999882] - Gisele Adriana Bubna, Rogério Barbosa Lima, Daniele Yara Lucca Zanardo, Wanderley Dantas Dos Santos, Maria de Lourdes Lucio Ferrarese, Osvaldo Ferrarese-Filho. Exogenous caffeic acid inhibits the growth and enhances the lignification of the roots of soybean (Glycine max).
Journal of plant physiology.
2011 Sep; 168(14):1627-33. doi:
10.1016/j.jplph.2011.03.005. [PMID: 21489652] - Chuanzhen Zhou, Quanzi Li, Vincent L Chiang, Lucian A Lucia, Dieter P Griffis. Chemical and spatial differentiation of syringyl and guaiacyl lignins in poplar wood via time-of-flight secondary ion mass spectrometry.
Analytical chemistry.
2011 Sep; 83(18):7020-6. doi:
10.1021/ac200903y. [PMID: 21851065] - Jing-Ke Weng, Takuya Akiyama, John Ralph, Clint Chapple. Independent recruitment of an O-methyltransferase for syringyl lignin biosynthesis in Selaginella moellendorffii.
The Plant cell.
2011 Jul; 23(7):2708-24. doi:
10.1105/tpc.110.081547. [PMID: 21742988] - Barek Tamasloukht, Mary Sarah-Jane Wong Quai Lam, Yves Martinez, Koffi Tozo, Odile Barbier, Cyril Jourda, Alain Jauneau, Gisèle Borderies, Sandrine Balzergue, Jean-Pierre Renou, Stéphanie Huguet, Jean Pierre Martinant, Christophe Tatout, Catherine Lapierre, Yves Barrière, Deborah Goffner, Magalie Pichon. Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression.
Journal of experimental botany.
2011 Jul; 62(11):3837-48. doi:
10.1093/jxb/err077. [PMID: 21493812] - Desmond J Stackpole, René E Vaillancourt, Ana Alves, José Rodrigues, Brad M Potts. Genetic Variation in the Chemical Components of Eucalyptus globulus Wood.
G3 (Bethesda, Md.).
2011 Jul; 1(2):151-9. doi:
10.1534/g3.111.000372. [PMID: 22384327] - Jing Ke, Dhrubojyoti D Laskar, Deepak Singh, Shulin Chen. In situ lignocellulosic unlocking mechanism for carbohydrate hydrolysis in termites: crucial lignin modification.
Biotechnology for biofuels.
2011 Jun; 4(?):17. doi:
10.1186/1754-6834-4-17. [PMID: 21672247] - Jean-Marc Gion, Audrey Carouché, Sylvie Deweer, Franck Bedon, Frédérique Pichavant, Jean-Paul Charpentier, Henri Baillères, Philippe Rozenberg, Victor Carocha, Nina Ognouabi, Daniel Verhaegen, Jacqueline Grima-Pettenati, Philippe Vigneron, Christophe Plomion. Comprehensive genetic dissection of wood properties in a widely-grown tropical tree: Eucalyptus.
BMC genomics.
2011 Jun; 12(?):301. doi:
10.1186/1471-2164-12-301. [PMID: 21651758] - Maurice Bosch, Claus-Dieter Mayer, Alan Cookson, Iain S Donnison. Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes.
Journal of experimental botany.
2011 Jun; 62(10):3545-61. doi:
10.1093/jxb/err045. [PMID: 21402660] - Jing Ke, Dhrubojyoti Dey Laskar, Shulin Chen. Biodegradation of hardwood lignocellulosics by the western poplar clearwing borer, Paranthrene robiniae (Hy. Edwards).
Biomacromolecules.
2011 May; 12(5):1610-20. doi:
10.1021/bm2000132. [PMID: 21405063] - Yun Lee, Fang Chen, Lina Gallego-Giraldo, Richard A Dixon, Eberhard O Voit. Integrative analysis of transgenic alfalfa (Medicago sativa L.) suggests new metabolic control mechanisms for monolignol biosynthesis.
PLoS computational biology.
2011 May; 7(5):e1002047. doi:
10.1371/journal.pcbi.1002047. [PMID: 21625579] - Guanwu Zhou, Gail Taylor, Andrea Polle. FTIR-ATR-based prediction and modelling of lignin and energy contents reveals independent intra-specific variation of these traits in bioenergy poplars.
Plant methods.
2011 Apr; 7(?):9. doi:
10.1186/1746-4811-7-9. [PMID: 21477346] - Véronique Coma, Elise Portes, Christian Gardrat, Florence Richard-Forget, Alain Castellan. In vitro inhibitory effect of tetrahydrocurcuminoids on Fusarium proliferatum growth and fumonisin B₁ biosynthesis.
Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment.
2011 Feb; 28(2):218-25. doi:
10.1080/19440049.2010.540721. [PMID: 21240822] - Madana M R Ambavaram, Arjun Krishnan, Kurniawan R Trijatmiko, Andy Pereira. Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice.
Plant physiology.
2011 Feb; 155(2):916-31. doi:
10.1104/pp.110.168641. [PMID: 21205614] - Jorge Rencoret, Ana Gutiérrez, Lidia Nieto, J Jiménez-Barbero, Craig B Faulds, Hoon Kim, John Ralph, Angel T Martínez, José C Del Río. Lignin composition and structure in young versus adult Eucalyptus globulus plants.
Plant physiology.
2011 Feb; 155(2):667-82. doi:
10.1104/pp.110.167254. [PMID: 21098672] - J M Espiñeira, E Novo Uzal, L V Gómez Ros, J S Carrión, F Merino, A Ros Barceló, F Pomar. Distribution of lignin monomers and the evolution of lignification among lower plants.
Plant biology (Stuttgart, Germany).
2011 Jan; 13(1):59-68. doi:
10.1111/j.1438-8677.2010.00345.x. [PMID: 21143726] - Sébastien Verne, Barry Jaquish, Rick White, Carol Ritland, Kermit Ritland. Global transcriptome analysis of constitutive resistance to the white pine weevil in spruce.
Genome biology and evolution.
2011; 3(?):851-67. doi:
10.1093/gbe/evr069. [PMID: 21852250] - Beng Guat Ooi, Ashley L Rambo, Miguel A Hurtado. Overcoming the recalcitrance for the conversion of kenaf pulp to glucose via microwave-assisted pre-treatment processes.
International journal of molecular sciences.
2011; 12(3):1451-63. doi:
10.3390/ijms12031451. [PMID: 21673900] - Xu Li, Eduardo Ximenes, Youngmi Kim, Mary Slininger, Richard Meilan, Michael Ladisch, Clint Chapple. Lignin monomer composition affects Arabidopsis cell-wall degradability after liquid hot water pretreatment.
Biotechnology for biofuels.
2010 Dec; 3(?):27. doi:
10.1186/1754-6834-3-27. [PMID: 21126354] - Gordon V Louie, Marianne E Bowman, Yi Tu, Aidyn Mouradov, German Spangenberg, Joseph P Noel. Structure-function analyses of a caffeic acid O-methyltransferase from perennial ryegrass reveal the molecular basis for substrate preference.
The Plant cell.
2010 Dec; 22(12):4114-27. doi:
10.1105/tpc.110.077578. [PMID: 21177481] - Shu-Min Yang, Ze-Hui Jiang, Hai-Qing Ren, Ben-Hua Fei, Xing-E Liu. [Determination of lignin distribution during ageing of bamboo culms (Phyllostachys pubescens) with visible-light spectrophotometry].
Guang pu xue yu guang pu fen xi = Guang pu.
2010 Dec; 30(12):3399-404. doi:
". [PMID: 21322248] - Tongming Yin, Xinye Zhang, Lee Gunter, Ranjan Priya, Robert Sykes, Mark Davis, Stan D Wullschleger, Gerald A Tuskan. Differential detection of genetic Loci underlying stem and root lignin content in Populus.
PloS one.
2010 Nov; 5(11):e14021. doi:
10.1371/journal.pone.0014021. [PMID: 21151641] - Aline Finger-Teixeira, Maria de Lourdes Lucio Ferrarese, Anderson Ricardo Soares, Débora da Silva, Osvaldo Ferrarese-Filho. Cadmium-induced lignification restricts soybean root growth.
Ecotoxicology and environmental safety.
2010 Nov; 73(8):1959-64. doi:
10.1016/j.ecoenv.2010.08.021. [PMID: 20817298] - Carmen Gayoso, Federico Pomar, Esther Novo-Uzal, Fuencisla Merino, Oskar Martínez de Ilárduya. The Ve-mediated resistance response of the tomato to Verticillium dahliae involves H2O2, peroxidase and lignins and drives PAL gene expression.
BMC plant biology.
2010 Oct; 10(?):232. doi:
10.1186/1471-2229-10-232. [PMID: 20977727] - Yi Tu, Simone Rochfort, Zhiqian Liu, Yidong Ran, Megan Griffith, Pieter Badenhorst, Gordon V Louie, Marianne E Bowman, Kevin F Smith, Joseph P Noel, Aidyn Mouradov, German Spangenberg. Functional analyses of caffeic acid O-Methyltransferase and Cinnamoyl-CoA-reductase genes from perennial ryegrass (Lolium perenne).
The Plant cell.
2010 Oct; 22(10):3357-73. doi:
10.1105/tpc.109.072827. [PMID: 20952635] - Steven L Voelker, Barbara Lachenbruch, Frederick C Meinzer, Michael Jourdes, Chanyoung Ki, Ann M Patten, Laurence B Davin, Norman G Lewis, Gerald A Tuskan, Lee Gunter, Stephen R Decker, Michael J Selig, Robert Sykes, Michael E Himmel, Peter Kitin, Olga Shevchenko, Steven H Strauss. Antisense down-regulation of 4CL expression alters lignification, tree growth, and saccharification potential of field-grown poplar.
Plant physiology.
2010 Oct; 154(2):874-86. doi:
10.1104/pp.110.159269. [PMID: 20729393] - Jill L Wegrzyn, Andrew J Eckert, Minyoung Choi, Jennifer M Lee, Brian J Stanton, Robert Sykes, Mark F Davis, Chung-Jui Tsai, David B Neale. Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem.
The New phytologist.
2010 Oct; 188(2):515-32. doi:
10.1111/j.1469-8137.2010.03415.x. [PMID: 20831625] - Peter Kitin, Steven L Voelker, Frederick C Meinzer, Hans Beeckman, Steven H Strauss, Barbara Lachenbruch. Tyloses and phenolic deposits in xylem vessels impede water transport in low-lignin transgenic poplars: a study by cryo-fluorescence microscopy.
Plant physiology.
2010 Oct; 154(2):887-98. doi:
10.1104/pp.110.156224. [PMID: 20639405] - Claudia Cosio, Christophe Dunand. Transcriptome analysis of various flower and silique development stages indicates a set of class III peroxidase genes potentially involved in pod shattering in Arabidopsis thaliana.
BMC genomics.
2010 Sep; 11(?):528. doi:
10.1186/1471-2164-11-528. [PMID: 20920253] - Ingela Bjurhager, Anne-Mari Olsson, Bo Zhang, Lorenz Gerber, Manoj Kumar, Lars A Berglund, Ingo Burgert, Björn Sundberg, Lennart Salmén. Ultrastructure and mechanical properties of populus wood with reduced lignin content caused by transgenic down-regulation of cinnamate 4-hydroxylase.
Biomacromolecules.
2010 Sep; 11(9):2359-65. doi:
10.1021/bm100487e. [PMID: 20831275] - Navneet Phogat, Vaibhav Vindal, Vikash Kumar, Krishna K Inampudi, Nirmal K Prasad. Sequence analysis, in silico modeling and docking studies of caffeoyl CoA-O-methyltransferase of Populus trichopora.
Journal of molecular modeling.
2010 Sep; 16(9):1461-71. doi:
10.1007/s00894-010-0656-1. [PMID: 20169383] - Kris Morreel, Oana Dima, Hoon Kim, Fachuang Lu, Claudiu Niculaes, Ruben Vanholme, Rebecca Dauwe, Geert Goeminne, Dirk Inzé, Eric Messens, John Ralph, Wout Boerjan. Mass spectrometry-based sequencing of lignin oligomers.
Plant physiology.
2010 Aug; 153(4):1464-78. doi:
10.1104/pp.110.156489. [PMID: 20554692] - Jian-Min Zhou, Eunjung Lee, Francesca Kanapathy-Sinnaiaha, Younghee Park, Jack A Kornblatt, Yoongho Lim, Ragai K Ibrahim. Structure-function relationships of wheat flavone O-methyltransferase: Homology modeling and site-directed mutagenesis.
BMC plant biology.
2010 Jul; 10(?):156. doi:
10.1186/1471-2229-10-156. [PMID: 20670441] - Young-Hwa Kim, Jung Myung Bae, Gyung-Hye Huh. Transcriptional regulation of the cinnamyl alcohol dehydrogenase gene from sweet potato in response to plant developmental stage and environmental stress.
Plant cell reports.
2010 Jul; 29(7):779-91. doi:
10.1007/s00299-010-0864-2. [PMID: 20454964] - Frederik R D van Parijs, Kris Morreel, John Ralph, Wout Boerjan, Roeland M H Merks. Modeling lignin polymerization. I. Simulation model of dehydrogenation polymers.
Plant physiology.
2010 Jul; 153(3):1332-44. doi:
10.1104/pp.110.154468. [PMID: 20472753] - Xinguo Li, Harry X Wu, Simon G Southerton. Comparative genomics reveals conservative evolution of the xylem transcriptome in vascular plants.
BMC evolutionary biology.
2010 Jun; 10(?):190. doi:
10.1186/1471-2148-10-190. [PMID: 20565927] - John H Grabber, Paul F Schatz, Hoon Kim, Fachuang Lu, John Ralph. Identifying new lignin bioengineering targets: 1. Monolignol-substitute impacts on lignin formation and cell wall fermentability.
BMC plant biology.
2010 Jun; 10(?):114. doi:
10.1186/1471-2229-10-114. [PMID: 20565789] - Fachuang Lu, Jane M Marita, Catherine Lapierre, Lise Jouanin, Kris Morreel, Wout Boerjan, John Ralph. Sequencing around 5-hydroxyconiferyl alcohol-derived units in caffeic acid O-methyltransferase-deficient poplar lignins.
Plant physiology.
2010 Jun; 153(2):569-79. doi:
10.1104/pp.110.154278. [PMID: 20427467] - Blake A Simmons, Dominique Loqué, John Ralph. Advances in modifying lignin for enhanced biofuel production.
Current opinion in plant biology.
2010 Jun; 13(3):313-20. doi:
10.1016/j.pbi.2010.03.001. [PMID: 20359939] - Qing-Hu Ma. Functional analysis of a cinnamyl alcohol dehydrogenase involved in lignin biosynthesis in wheat.
Journal of experimental botany.
2010 Jun; 61(10):2735-44. doi:
10.1093/jxb/erq107. [PMID: 20400532] - Abdelali Barakat, Agnieszka Bagniewska-Zadworna, Christopher J Frost, John E Carlson. Phylogeny and expression profiling of CAD and CAD-like genes in hybrid Populus (P. deltoides x P. nigra): evidence from herbivore damage for subfunctionalization and functional divergence.
BMC plant biology.
2010 May; 10(?):100. doi:
10.1186/1471-2229-10-100. [PMID: 20509918] - Jing-Ke Weng, Takuya Akiyama, Nicholas D Bonawitz, Xu Li, John Ralph, Clint Chapple. Convergent evolution of syringyl lignin biosynthesis via distinct pathways in the lycophyte Selaginella and flowering plants.
The Plant cell.
2010 Apr; 22(4):1033-45. doi:
10.1105/tpc.109.073528. [PMID: 20371642] - Cliff E Foster, Tina M Martin, Markus Pauly. Comprehensive compositional analysis of plant cell walls (Lignocellulosic biomass) part I: lignin.
Journal of visualized experiments : JoVE.
2010 Mar; ?(37):. doi:
10.3791/1745. [PMID: 20224547] - Ann M Patten, Michaël Jourdes, Claudia L Cardenas, Dhrubojyoti D Laskar, Yoshihisa Nakazawa, Byung-Yeoup Chung, Vincent R Franceschi, Laurence B Davin, Norman G Lewis. Probing native lignin macromolecular configuration in Arabidopsis thaliana in specific cell wall types: further insights into limited substrate degeneracy and assembly of the lignins of ref8, fah 1-2 and C4H::F5H lines.
Molecular bioSystems.
2010 Mar; 6(3):499-515. doi:
10.1039/b819206e. [PMID: 20174679] - Everton A Brenner, Imad Zein, Yongsheng Chen, Jeppe R Andersen, Gerhard Wenzel, Milena Ouzunova, Joachim Eder, Birte Darnhofer, Uschi Frei, Yves Barrière, Thomas Lübberstedt. Polymorphisms in O-methyltransferase genes are associated with stover cell wall digestibility in European maize (Zea mays L.).
BMC plant biology.
2010 Feb; 10(?):27. doi:
10.1186/1471-2229-10-27. [PMID: 20152036] - Rogelio Santiago, Rosa A Malvar. Role of dehydrodiferulates in maize resistance to pests and diseases.
International journal of molecular sciences.
2010 Feb; 11(2):691-703. doi:
10.3390/ijms11020691. [PMID: 20386661] - Hoon Kim, John Ralph. Solution-state 2D NMR of ball-milled plant cell wall gels in DMSO-d(6)/pyridine-d(5).
Organic & biomolecular chemistry.
2010 Feb; 8(3):576-91. doi:
10.1039/b916070a. [PMID: 20090974] - Fernando Piston, Cristobal Uauy, Lianhai Fu, James Langston, John Labavitch, Jorge Dubcovsky. Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls.
Planta.
2010 Feb; 231(3):677-91. doi:
10.1007/s00425-009-1077-1. [PMID: 20012086] - Enrico Cappellini, M Thomas P Gilbert, Filippo Geuna, Girolamo Fiorentino, Allan Hall, Jane Thomas-Oates, Peter D Ashton, David A Ashford, Paul Arthur, Paula F Campos, Johan Kool, Eske Willerslev, Matthew J Collins. A multidisciplinary study of archaeological grape seeds.
Die Naturwissenschaften.
2010 Feb; 97(2):205-17. doi:
10.1007/s00114-009-0629-3. [PMID: 20033124] - Yongsheng Chen, Imad Zein, Everton Alen Brenner, Jeppe Reitan Andersen, Mathias Landbeck, Milena Ouzunova, Thomas Lübberstedt. Polymorphisms in monolignol biosynthetic genes are associated with biomass yield and agronomic traits in European maize (Zea mays L.).
BMC plant biology.
2010 Jan; 10(?):12. doi:
10.1186/1471-2229-10-12. [PMID: 20078869] - Zhanyou Xu, Dandan Zhang, Jun Hu, Xin Zhou, Xia Ye, Kristen L Reichel, Nathan R Stewart, Ryan D Syrenne, Xiaohan Yang, Peng Gao, Weibing Shi, Crissa Doeppke, Robert W Sykes, Jason N Burris, Joseph J Bozell, Max Zong-Ming Cheng, Douglas G Hayes, Nicole Labbe, Mark Davis, C Neal Stewart, Joshua S Yuan. Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom.
BMC bioinformatics.
2009 Oct; 10 Suppl 11(?):S3. doi:
10.1186/1471-2105-10-s11-s3. [PMID: 19811687] - Suvi Sutela, Karoliina Niemi, Jaanika Edesi, Tapio Laakso, Pekka Saranpää, Jaana Vuosku, Riina Mäkelä, Heidi Tiimonen, Vincent L Chiang, Janne Koskimäki, Marja Suorsa, Riitta Julkunen-Tiitto, Hely Häggman. Phenolic compounds in ectomycorrhizal interaction of lignin modified silver birch.
BMC plant biology.
2009 Sep; 9(?):124. doi:
10.1186/1471-2229-9-124. [PMID: 19788757] - J Rozema, P Blokker, M A Mayoral Fuertes, R Broekman. UV-B absorbing compounds in present-day and fossil pollen, spores, cuticles, seed coats and wood: evaluation of a proxy for solar UV radiation.
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.
2009 Sep; 8(9):1233-43. doi:
10.1039/b904515e. [PMID: 19707612] - Jaclyn J Stewart, Takuya Akiyama, Clint Chapple, John Ralph, Shawn D Mansfield. The effects on lignin structure of overexpression of ferulate 5-hydroxylase in hybrid poplar.
Plant physiology.
2009 Jun; 150(2):621-35. doi:
10.1104/pp.109.137059. [PMID: 19386808] - Andrew R Robinson, Shawn D Mansfield. Rapid analysis of poplar lignin monomer composition by a streamlined thioacidolysis procedure and near-infrared reflectance-based prediction modeling.
The Plant journal : for cell and molecular biology.
2009 May; 58(4):706-14. doi:
10.1111/j.1365-313x.2009.03808.x. [PMID: 19175772] - Abdelali Barakat, Agnieszka Bagniewska-Zadworna, Alex Choi, Urmila Plakkat, Denis S DiLoreto, Priyadarshini Yellanki, John E Carlson. The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression.
BMC plant biology.
2009 Mar; 9(?):26. doi:
10.1186/1471-2229-9-26. [PMID: 19267902] - Bassem B Hallac, Poulomi Sannigrahi, Yunqiao Pu, Michael Ray, Richard J Murphy, Arthur J Ragauskas. Biomass characterization of Buddleja davidii: a potential feedstock for biofuel production.
Journal of agricultural and food chemistry.
2009 Feb; 57(4):1275-81. doi:
10.1021/jf8030277. [PMID: 19170631] - Esther Novo Uzal, Laura V Gómez Ros, Federico Pomar, María A Bernal, Alberto Paradela, Juan P Albar, Alfonso Ros Barceló. The presence of sinapyl lignin in Ginkgo biloba cell cultures changes our views of the evolution of lignin biosynthesis.
Physiologia plantarum.
2009 Feb; 135(2):196-213. doi:
10.1111/j.1399-3054.2008.01185.x. [PMID: 19055540] - Katia Ruel, Jimmy Berrio-Sierra, Mohammad Mir Derikvand, Brigitte Pollet, Johanne Thévenin, Catherine Lapierre, Lise Jouanin, Jean-Paul Joseleau. Impact of CCR1 silencing on the assembly of lignified secondary walls in Arabidopsis thaliana.
The New phytologist.
2009; 184(1):99-113. doi:
10.1111/j.1469-8137.2009.02951.x. [PMID: 19674336] - Thierry Joët, Andréina Laffargue, Jordi Salmona, Sylvie Doulbeau, Frédéric Descroix, Benoît Bertrand, Alexandre de Kochko, Stéphane Dussert. Metabolic pathways in tropical dicotyledonous albuminous seeds: Coffea arabica as a case study.
The New phytologist.
2009; 182(1):146-162. doi:
10.1111/j.1469-8137.2008.02742.x. [PMID: 19207685] - Robert Sykes, Matthew Yung, Evandro Novaes, Matias Kirst, Gary Peter, Mark Davis. High-throughput screening of plant cell-wall composition using pyrolysis molecular beam mass spectroscopy.
Methods in molecular biology (Clifton, N.J.).
2009; 581(?):169-83. doi:
10.1007/978-1-60761-214-8_12. [PMID: 19768623] - Michaël Quentin, Valérie Allasia, Anthony Pegard, Florent Allais, Paul-Henri Ducrot, Bruno Favery, Caroline Levis, Sophie Martinet, Clarissa Masur, Michel Ponchet, Dominique Roby, Nikolaus L Schlaich, Lise Jouanin, Harald Keller. Imbalanced lignin biosynthesis promotes the sexual reproduction of homothallic oomycete pathogens.
PLoS pathogens.
2009 Jan; 5(1):e1000264. doi:
10.1371/journal.ppat.1000264. [PMID: 19148278] - Nazmul H Bhuiyan, Gopalan Selvaraj, Yangdou Wei, John King. Gene expression profiling and silencing reveal that monolignol biosynthesis plays a critical role in penetration defence in wheat against powdery mildew invasion.
Journal of experimental botany.
2009; 60(2):509-21. doi:
10.1093/jxb/ern290. [PMID: 19039100] - Marina A Naoumkina, XianZhi He, Richard A Dixon. Elicitor-induced transcription factors for metabolic reprogramming of secondary metabolism in Medicago truncatula.
BMC plant biology.
2008 Dec; 8(?):132. doi:
10.1186/1471-2229-8-132. [PMID: 19102779] - Nathan A Palmer, Scott E Sattler, Aaron J Saathoff, Deanna Funnell, Jeffery F Pedersen, Gautam Sarath. Genetic background impacts soluble and cell wall-bound aromatics in brown midrib mutants of sorghum.
Planta.
2008 Dec; 229(1):115-27. doi:
10.1007/s00425-008-0814-1. [PMID: 18795321] - Ronald Hatfield, John Ralph, John H Grabber. A potential role for sinapyl p-coumarate as a radical transfer mechanism in grass lignin formation.
Planta.
2008 Nov; 228(6):919-28. doi:
10.1007/s00425-008-0791-4. [PMID: 18654797] - Pei Sun Loh, Axel E J Miller, Alison D Reeves, S Martyn Harvey, Julian Overnell. Optimised recovery of lignin-derived phenols in a Scottish fjord by the CuO oxidation method.
Journal of environmental monitoring : JEM.
2008 Oct; 10(10):1187-94. doi:
10.1039/b808970a. [PMID: 19244642] - Sabine Guillaumie, Deborah Goffner, Odile Barbier, Jean-Pierre Martinant, Magalie Pichon, Yves Barrière. Expression of cell wall related genes in basal and ear internodes of silking brown-midrib-3, caffeic acid O-methyltransferase (COMT) down-regulated, and normal maize plants.
BMC plant biology.
2008 Jun; 8(?):71. doi:
10.1186/1471-2229-8-71. [PMID: 18582385] - William F Anderson, Danny E Akin. Structural and chemical properties of grass lignocelluloses related to conversion for biofuels.
Journal of industrial microbiology & biotechnology.
2008 May; 35(5):355-366. doi:
10.1007/s10295-007-0291-8. [PMID: 18188624] - Shinya Sasaki, Daisuke Nonaka, Hiroyuki Wariishi, Yuji Tsutsumi, Ryuichiro Kondo. Role of Tyr residues on the protein surface of cationic cell-wall-peroxidase (CWPO-C) from poplar: potential oxidation sites for oxidative polymerization of lignin.
Phytochemistry.
2008 Jan; 69(2):348-55. doi:
10.1016/j.phytochem.2007.08.020. [PMID: 17910963] - Roosa A E Laitinen, Miia Ainasoja, Suvi K Broholm, Teemu H Teeri, Paula Elomaa. Identification of target genes for a MYB-type anthocyanin regulator in Gerbera hybrida.
Journal of experimental botany.
2008; 59(13):3691-703. doi:
10.1093/jxb/ern216. [PMID: 18725377] - Jin Nakashima, Fang Chen, Lisa Jackson, Gail Shadle, Richard A Dixon. Multi-site genetic modification of monolignol biosynthesis in alfalfa (Medicago sativa): effects on lignin composition in specific cell types.
The New phytologist.
2008; 179(3):738-750. doi:
10.1111/j.1469-8137.2008.02502.x. [PMID: 18547377] - Jing-Ke Weng, Jo Ann Banks, Clint Chapple. Parallels in lignin biosynthesis: A study in Selaginella moellendorffii reveals convergence across 400 million years of evolution.
Communicative & integrative biology.
2008; 1(1):20-2. doi:
10.4161/cib.1.1.6466. [PMID: 19704782]