dodecylphosphocholine (BioDeep_00000386061)

   


代谢物信息卡片


2-(Trimethylammonio)ethyl dodecyl phosphate

化学式: C17H38NO4P (351.25383180000006)
中文名称: 正十二烷基磷酸胆碱
谱图信息: 最多检出来源 Viridiplantae(plant) 93.33%

分子结构信息

SMILES: CCCCCCCCCCCCOP(=O)([O-])OCC[N+](C)(C)C
InChI: InChI=1S/C17H38NO4P/c1-5-6-7-8-9-10-11-12-13-14-16-21-23(19,20)22-17-15-18(2,3)4/h5-17H2,1-4H3

描述信息

D004791 - Enzyme Inhibitors > D010726 - Phosphodiesterase Inhibitors

同义名列表

2 个代谢物同义名

2-(Trimethylammonio)ethyl dodecyl phosphate; dodecylphosphocholine



数据库引用编号

6 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

0 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Jeffrey A Julien, Sarah G Mutchek, Nathan J Wittenberg, Kerney Jebrell Glover. Biophysical characterization of full-length oleosin in dodecylphosphocholine micelles. Proteins. 2022 02; 90(2):560-565. doi: 10.1002/prot.26252. [PMID: 34596903]
  • Xiao Wang, Xiaowei Chen, Sylvie Nonin-Lecomte, Serge Bouaziz. Acetonitrile allows indirect replacement of nondeuterated lipid detergents by deuterated lipid detergents for the nuclear magnetic resonance study of detergent-soluble proteins. Protein science : a publication of the Protein Society. 2021 11; 30(11):2324-2332. doi: 10.1002/pro.4174. [PMID: 34462977]
  • Sheetal Sinha, Wun Jern Ng, Surajit Bhattacharjya. NMR structure and localization of the host defense antimicrobial peptide thanatin in zwitterionic dodecylphosphocholine micelle: Implications in antimicrobial activity. Biochimica et biophysica acta. Biomembranes. 2020 11; 1862(11):183432. doi: 10.1016/j.bbamem.2020.183432. [PMID: 32781154]
  • Delin Sun, Thasin A Peyear, W F Drew Bennett, Matthew Holcomb, Stewart He, Fangqiang Zhu, Felice C Lightstone, Olaf S Andersen, Helgi I Ingólfsson. Assessing the Perturbing Effects of Drugs on Lipid Bilayers Using Gramicidin Channel-Based In Silico and In Vitro Assays. Journal of medicinal chemistry. 2020 10; 63(20):11809-11818. doi: 10.1021/acs.jmedchem.0c00958. [PMID: 32945672]
  • Jihyun Kim, Ratnamala Mandal, Christian Hilty. Characterization of Membrane Protein-Lipid Interactions in Unfolded OmpX with Enhanced Time Resolution by Hyperpolarized NMR. Chembiochem : a European journal of chemical biology. 2020 10; 21(19):2861-2867. doi: 10.1002/cbic.202000271. [PMID: 32419259]
  • Marc-Antoine Sani, Anton P Le Brun, Frances Separovic. The antimicrobial peptide maculatin self assembles in parallel to form a pore in phospholipid bilayers. Biochimica et biophysica acta. Biomembranes. 2020 05; 1862(5):183204. doi: 10.1016/j.bbamem.2020.183204. [PMID: 31981588]
  • Manuela Grimaldi, Michela Buonocore, Mario Scrima, Ilaria Stillitano, Gerardino D'Errico, Angelo Santoro, Giuseppina Amodio, Daniela Eletto, Antonio Gloria, Teresa Russo, Ornella Moltedo, Paolo Remondelli, Alessandra Tosco, Hans L J Wienk, Anna Maria D'Ursi. NMR Structure of the FIV gp36 C-Terminal Heptad Repeat and Membrane-Proximal External Region. International journal of molecular sciences. 2020 03; 21(6):. doi: 10.3390/ijms21062037. [PMID: 32188158]
  • Srividya Ganapathy, Laura Opdam, Yusaku Hontani, Sean Frehan, Que Chen, Klaas J Hellingwerf, Huub J M de Groot, John T M Kennis, Willem J de Grip. Membrane matters: The impact of a nanodisc-bilayer or a detergent microenvironment on the properties of two eubacterial rhodopsins. Biochimica et biophysica acta. Biomembranes. 2020 02; 1862(2):183113. doi: 10.1016/j.bbamem.2019.183113. [PMID: 31672539]
  • Erik Henrich, Frank Löhr, Julija Mezhyrova, Aisha Laguerre, Frank Bernhard, Volker Dötsch. Synthetic Biology-Based Solution NMR Studies on Membrane Proteins in Lipid Environments. Methods in enzymology. 2019; 614(?):143-185. doi: 10.1016/bs.mie.2018.08.019. [PMID: 30611423]
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  • Vilius Kurauskas, Audrey Hessel, Peixiang Ma, Paola Lunetti, Katharina Weinhäupl, Lionel Imbert, Bernhard Brutscher, Martin S King, Rémy Sounier, Vincenza Dolce, Edmund R S Kunji, Loredana Capobianco, Christophe Chipot, François Dehez, Beate Bersch, Paul Schanda. How Detergent Impacts Membrane Proteins: Atomic-Level Views of Mitochondrial Carriers in Dodecylphosphocholine. The journal of physical chemistry letters. 2018 Mar; 9(5):933-938. doi: 10.1021/acs.jpclett.8b00269. [PMID: 29397729]
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  • John M Louis, James L Baber, Rodolfo Ghirlando, Annie Aniana, Ad Bax, Julien Roche. Insights into the Conformation of the Membrane Proximal Regions Critical to the Trimerization of the HIV-1 gp41 Ectodomain Bound to Dodecyl Phosphocholine Micelles. PloS one. 2016; 11(8):e0160597. doi: 10.1371/journal.pone.0160597. [PMID: 27513582]
  • Hiromasa Yagi, Paul J Conroy, Eleanor W W Leung, Ruby H P Law, Joseph A Trapani, Ilia Voskoboinik, James C Whisstock, Raymond S Norton. Structural Basis for Ca2+-mediated Interaction of the Perforin C2 Domain with Lipid Membranes. The Journal of biological chemistry. 2015 Oct; 290(42):25213-26. doi: 10.1074/jbc.m115.668384. [PMID: 26306037]
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  • XiangLong Zhao, WeiJia Chen, ZhengYin Zhou, QiQin Wang, ZhengHua Liu, Ruin Moaddel, ZhengJin Jiang. Preparation of a biomimetic polyphosphorylcholine monolithic column for immobilized artificial membrane chromatography. Journal of chromatography. A. 2015 Aug; 1407(?):176-83. doi: 10.1016/j.chroma.2015.06.056. [PMID: 26152527]
  • Héctor Zamora-Carreras, Beatriz Maestro, Erik Strandberg, Anne S Ulrich, Jesús M Sanz, M Ángeles Jiménez. Micelle-Triggered β-Hairpin to α-Helix Transition in a 14-Residue Peptide from a Choline-Binding Repeat of the Pneumococcal Autolysin LytA. Chemistry (Weinheim an der Bergstrasse, Germany). 2015 May; 21(22):8076-89. doi: 10.1002/chem.201500447. [PMID: 25917218]
  • Agata Zienowicz, Vladimir V Bamm, Kenrick A Vassall, George Harauz. Myelin basic protein is a glial microtubule-associated protein -- characterization of binding domains, kinetics of polymerization, and regulation by phosphorylation and a lipidic environment. Biochemical and biophysical research communications. 2015 May; 461(1):136-41. doi: 10.1016/j.bbrc.2015.03.181. [PMID: 25862371]
  • Daniel K Weber, Shenggen Yao, Nejc Rojko, Gregor Anderluh, Terry P Lybrand, Matthew T Downton, John Wagner, Frances Separovic. Characterization of the Lipid-Binding Site of Equinatoxin II by NMR and Molecular Dynamics Simulation. Biophysical journal. 2015 Apr; 108(8):1987-96. doi: 10.1016/j.bpj.2015.03.024. [PMID: 25902438]
  • Julien Roche, John M Louis, Annie Aniana, Rodolfo Ghirlando, Ad Bax. Complete dissociation of the HIV-1 gp41 ectodomain and membrane proximal regions upon phospholipid binding. Journal of biomolecular NMR. 2015 Apr; 61(3-4):235-48. doi: 10.1007/s10858-015-9900-4. [PMID: 25631354]
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  • Yi Ding, L Miya Fujimoto, Yong Yao, Gregory V Plano, Francesca M Marassi. Influence of the lipid membrane environment on structure and activity of the outer membrane protein Ail from Yersinia pestis. Biochimica et biophysica acta. 2015 Feb; 1848(2):712-20. doi: 10.1016/j.bbamem.2014.11.021. [PMID: 25433311]
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  • Susmita Bandyopadhyay, Boon Yee Ng, Charmaine Chong, Ming Zhen Lim, Sonia Kiran Gill, Ke Hui Lee, J Sivaraman, Chiradip Chatterjee. Micelle bound structure and DNA interaction of brevinin-2-related peptide, an antimicrobial peptide derived from frog skin. Journal of peptide science : an official publication of the European Peptide Society. 2014 Oct; 20(10):811-21. doi: 10.1002/psc.2673. [PMID: 25044683]
  • Nils-Alexander Lakomek, Joshua D Kaufman, Stephen J Stahl, Paul T Wingfield. HIV-1 envelope protein gp41: an NMR study of dodecyl phosphocholine embedded gp41 reveals a dynamic prefusion intermediate conformation. Structure (London, England : 1993). 2014 Sep; 22(9):1311-1321. doi: 10.1016/j.str.2014.06.016. [PMID: 25132083]
  • Lukas K Tamm, Jinwoo Lee, Binyong Liang. Capturing glimpses of an elusive HIV gp41 prehairpin fusion intermediate. Structure (London, England : 1993). 2014 Sep; 22(9):1225-1226. doi: 10.1016/j.str.2014.08.010. [PMID: 25185826]
  • Ali Alhoshani, Rosemarie Vithayathil, Jonathan Bandong, Katherine M Chrunyk, Gabriel O Moreno, Gregory A Weiss, Melanie J Cocco. Glutamate provides a key structural contact between reticulon-4 (Nogo-66) and phosphocholine. Biochimica et biophysica acta. 2014 Sep; 1838(9):2350-6. doi: 10.1016/j.bbamem.2014.05.021. [PMID: 24863057]
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