Agrocin 84 (BioDeep_00000019984)

   

human metabolite Endogenous


代谢物信息卡片


N-{[(5-{6-[({[5-(1,2-dihydroxyethyl)-3,4-dihydroxyoxolan-2-yl]oxy}(hydroxy)phosphoryl)amino]-9H-purin-9-yl}-4-hydroxyoxolan-2-yl)methoxy](hydroxy)phosphoryl}-2,3-dihydroxy-4-methylpentanimidate

化学式: C22H36N6O16P2 (702.1662956)
中文名称:
谱图信息: 最多检出来源 () 0%

分子结构信息

SMILES: CC(C)C(C(C(=O)NP(=O)(O)OCC1CC(C(O1)N2C=NC3=C(N=CN=C32)NP(=O)(O)OC4C(C(C(O4)C(CO)O)O)O)O)O)O
InChI: InChI=1S/C22H36N6O16P2/c1-8(2)13(32)15(34)20(36)27-45(37,38)41-5-9-3-10(30)21(42-9)28-7-25-12-18(23-6-24-19(12)28)26-46(39,40)44-22-16(35)14(33)17(43-22)11(31)4-29/h6-11,13-17,21-22,29-35H,3-5H2,1-2H3,(H2,27,36,37,38)(H2,23,24,26,39,40)

描述信息

Agrocin 84 is a bacteriocin active against Agrobacterium tumefacien

同义名列表

5 个代谢物同义名

N-{[(5-{6-[({[5-(1,2-dihydroxyethyl)-3,4-dihydroxyoxolan-2-yl]oxy}(hydroxy)phosphoryl)amino]-9H-purin-9-yl}-4-hydroxyoxolan-2-yl)methoxy](hydroxy)phosphoryl}-2,3-dihydroxy-4-methylpentanimidate; ({9-[5-({[(2,3-dihydroxy-4-methylpentanamido)(hydroxy)phosphoryl]oxy}methyl)-3-hydroxyoxolan-2-yl]-9H-purin-6-yl}amino)({[5-(1,2-dihydroxyethyl)-3,4-dihydroxyoxolan-2-yl]oxy})phosphinic acid; {9-[5-({[2,3-dihydroxy-4-methylpentanamido(hydroxy)phosphoryl]oxy}methyl)-3-hydroxyoxolan-2-yl]purin-6-yl}amino[5-(1,2-dihydroxyethyl)-3,4-dihydroxyoxolan-2-yl]oxyphosphinic acid; Agrocin 84; Agrocin



数据库引用编号

8 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

1 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。



文献列表

  • Shaileja Chopra, Andrés Palencia, Cornelia Virus, Ashutosh Tripathy, Brenda R Temple, Adrian Velazquez-Campoy, Stephen Cusack, John S Reader. Plant tumour biocontrol agent employs a tRNA-dependent mechanism to inhibit leucyl-tRNA synthetase. Nature communications. 2013; 4(?):1417. doi: 10.1038/ncomms2421. [PMID: 23361008]
  • Ramón Penyalver, Phil M Oger, Shengchang Su, Belén Alvarez, Carmina I Salcedo, María M López, Stephen K Farrand. The S-adenosyl-L-homocysteine hydrolase gene ahcY of Agrobacterium radiobacter K84 is required for optimal growth, antibiotic production, and biocontrol of crown gall disease. Molecular plant-microbe interactions : MPMI. 2009 Jun; 22(6):713-24. doi: 10.1094/mpmi-22-6-0713. [PMID: 19445596]
  • Jung-Gun Kim, Byoung Keun Park, Sung-Uk Kim, Doil Choi, Baek Hie Nahm, Jae Sun Moon, John S Reader, Stephen K Farrand, Ingyu Hwang. Bases of biocontrol: sequence predicts synthesis and mode of action of agrocin 84, the Trojan horse antibiotic that controls crown gall. Proceedings of the National Academy of Sciences of the United States of America. 2006 Jun; 103(23):8846-51. doi: 10.1073/pnas.0602965103. [PMID: 16731618]
  • John S Reader, Phillip T Ordoukhanian, Jung-Gun Kim, Valerie de Crécy-Lagard, Ingyu Hwang, Stephen Farrand, Paul Schimmel. Major biocontrol of plant tumors targets tRNA synthetase. Science (New York, N.Y.). 2005 Sep; 309(5740):1533. doi: 10.1126/science.1116841. [PMID: 16141066]
  • H Wang, X Sui, J Li, X Dai, D Ma. [Isolation and identification of Agrobacterium spp. from cherry crown galls and their sensitivities to agrocin 84]. Wei sheng wu xue bao = Acta microbiologica Sinica. 1998 Oct; 38(5):381-5. doi: ". [PMID: 12549403]
  • S K Farrand, C L Wang, S B Hong, S B O'Morchoe, J E Slota. Deletion derivatives of pAgK84 and their use in the analysis of Agrobacterium plasmid functions. Plasmid. 1992 Nov; 28(3):201-12. doi: 10.1016/0147-619x(92)90052-c. [PMID: 1461939]
  • S B von Bodman, J E McCutchan, S K Farrand. Characterization of conjugal transfer functions of Agrobacterium tumefaciens Ti plasmid pTiC58. Journal of bacteriology. 1989 Oct; 171(10):5281-9. doi: 10.1128/jb.171.10.5281-5289.1989. [PMID: 2551885]
  • L W Moore. Use of Agrobacterium radiobacter in agricultural ecosystems. Microbiological sciences. 1988 Mar; 5(3):92-5. doi: ". [PMID: 3079224]
  • L Unger, S F Ziegler, G A Huffman, V C Knauf, R Peet, L W Moore, M P Gordon, E W Nester. New class of limited-host-range Agrobacterium mega-tumor-inducing plasmids lacking homology to the transferred DNA of a wide-host-range, tumor-inducing plasmid. Journal of bacteriology. 1985 Nov; 164(2):723-30. doi: 10.1128/jb.164.2.723-730.1985. [PMID: 4055698]
  • M H Ryder, M E Tate, G P Jones. Agrocinopine A, a tumor-inducing plasmid-coded enzyme product, is a phosphodiester of sucrose and L-arabinose. The Journal of biological chemistry. 1984 Aug; 259(15):9704-10. doi: . [PMID: 6746666]
  • A Kerr, M E Tate. Agrocins and the biological control of crown gall. Microbiological sciences. 1984 Apr; 1(1):1-4. doi: ". [PMID: 6444087]