Arabinofuranose (BioDeep_00000014637)

 

Secondary id: BioDeep_00001869883

human metabolite Endogenous


代谢物信息卡片


(3R,4R,5S)-5-(hydroxymethyl)oxolane-2,3,4-triol

化学式: C5H10O5 (150.0528)
中文名称:
谱图信息: 最多检出来源 Rattus norvegicus(urine) 11.82%

分子结构信息

SMILES: C(C1C(C(C(O1)O)O)O)O
InChI: InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5?/m0/s1

描述信息

Arabinofuranose refers to the furanose form of arabinose, which is an optical isomer of arabinose. For biosynthetic reasons, most saccharides are almost always more abundant in nature as the "D" form, or structurally analogous to D-(+)-glyceraldehyde. However, L-arabinose is in fact more common than D-arabinose in nature and is found in nature as a component of biopolymers such as hemicellulose and pectin. [HMDB]
Arabinofuranose refers to the furanose form of arabinose, which is an optical isomer of arabinose. For biosynthetic reasons, most saccharides are almost always more abundant in nature as the "D" form, or structurally analogous to D-(+)-glyceraldehyde. However, L-arabinose is in fact more common than D-arabinose in nature and is found in nature as a component of biopolymers such as hemicellulose and pectin.

同义名列表

4 个代谢物同义名

(3R,4R,5S)-5-(hydroxymethyl)oxolane-2,3,4-triol; WURCS=2.0/1,1,0/[a211h-1x_1-4]/1/; L-Arabinofuranose; Arabinofuranose



数据库引用编号

13 个数据库交叉引用编号

分类词条

相关代谢途径

Reactome(0)

BioCyc(0)

PlantCyc(0)

代谢反应

0 个相关的代谢反应过程信息。

Reactome(0)

BioCyc(0)

WikiPathways(0)

Plant Reactome(0)

INOH(0)

PlantCyc(0)

COVID-19 Disease Map(0)

PathBank(0)

PharmGKB(0)

1 个相关的物种来源信息

在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有：

  • PubMed: 来源于PubMed文献库中的文献信息，我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表，这个列表按照代谢物同时出现的文献数量降序排序，取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
  • NCBI Taxonomy: 通过文献数据挖掘，得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序，取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
  • Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
  • Chemical Reaction: 在化学反应过程中，存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。

点击图上的相关代谢物的名称，可以跳转到相关代谢物的信息页面。

亚细胞结构定位 关联基因列表


文献列表

  • Konstantinos Drousiotis, Reyme Herman, Judith Hawkhead, Andrew Leech, Anthony Wilkinson, Gavin H Thomas. Characterization of the l-arabinofuranose-specific GafABCD ABC transporter essential for l-arabinose-dependent growth of the lignocellulose-degrading bacterium Shewanella sp. ANA-3. Microbiology (Reading, England). 2023 03; 169(3):. doi: 10.1099/mic.0.001308. [PMID: 36920280]
  • Masayuki Nakamura, Yuino Yasukawa, Akira Furusawa, Tamao Fuchiwaki, Takashi Honda, Yuta Okamura, Kiyotaka Fujita, Hisashi Iwai. Functional characterization of unique enzymes in Xanthomonas euvesicatoria related to degradation of arabinofurano-oligosaccharides on hydroxyproline-rich glycoproteins. PloS one. 2018; 13(8):e0201982. doi: 10.1371/journal.pone.0201982. [PMID: 30092047]
  • Di Huang, Jia Liu, Yanfei Qi, Kexin Yang, Yingying Xu, Lu Feng. Synergistic hydrolysis of xylan using novel xylanases, β-xylosidases, and an α-L-arabinofuranosidase from Geobacillus thermodenitrificans NG80-2. Applied microbiology and biotechnology. 2017 Aug; 101(15):6023-6037. doi: 10.1007/s00253-017-8341-2. [PMID: 28616644]
  • Chiemi Imaizumi, Harumi Tomatsu, Kiminari Kitazawa, Yoshihisa Yoshimi, Seiji Shibano, Kaoru Kikuchi, Masatoshi Yamaguchi, Satoshi Kaneko, Yoichi Tsumuraya, Toshihisa Kotake. Heterologous expression and characterization of an Arabidopsis β-l-arabinopyranosidase and α-d-galactosidases acting on β-l-arabinopyranosyl residues. Journal of experimental botany. 2017 07; 68(16):4651-4661. doi: 10.1093/jxb/erx279. [PMID: 28981776]
  • Cecilia C Panizzo, Paula V Fernández, Darío Colombatto, Marina Ciancia, Andrea S Vega. Anatomy, nutritional value and cell wall chemical analysis of foliage leaves of Guadua chacoensis (Poaceae, Bambusoideae, Bambuseae), a promising source of forage. Journal of the science of food and agriculture. 2017 Mar; 97(4):1349-1358. doi: 10.1002/jsfa.7873. [PMID: 27363316]
  • Minako Sumiyoshi, Takuya Inamura, Atsuko Nakamura, Tsutomu Aohara, Tadashi Ishii, Shinobu Satoh, Hiroaki Iwai. UDP-arabinopyranose mutase 3 is required for pollen wall morphogenesis in rice (Oryza sativa). Plant & cell physiology. 2015 Feb; 56(2):232-41. doi: 10.1093/pcp/pcu132. [PMID: 25261533]
  • Tasuku Ito, Kyo Saikawa, Seonah Kim, Kiyotaka Fujita, Akihiro Ishiwata, Sophon Kaeothip, Takatoshi Arakawa, Takayoshi Wakagi, Gregg T Beckham, Yukishige Ito, Shinya Fushinobu. Crystal structure of glycoside hydrolase family 127 β-l-arabinofuranosidase from Bifidobacterium longum. Biochemical and biophysical research communications. 2014 Apr; 447(1):32-7. doi: 10.1016/j.bbrc.2014.03.096. [PMID: 24680821]
  • Matthew B Kraft, Mario A Martinez Farias, Laura L Kiessling. Synthesis of lipid-linked arabinofuranose donors for glycosyltransferases. The Journal of organic chemistry. 2013 Mar; 78(5):2128-33. doi: 10.1021/jo302507p. [PMID: 23373821]
  • Eshita Kar Mandal, Soumitra Mandal, Saikat Maity, Birendra Behera, Tapas K Maiti, Syed S Islam. Structural studies of an immunostimulating gluco-arabinan from seeds of Caesalpinia bonduc. Carbohydrate polymers. 2013 Jan; 92(1):704-11. doi: 10.1016/j.carbpol.2012.08.093. [PMID: 23218357]
  • Vinciane Borsenberger, Fernando Ferreira, Annick Pollet, Emmie Dornez, Marie-Laure Desrousseaux, Stéphane Massou, Christophe M Courtin, Michael J O'Donohue, Régis Fauré. A versatile and colorful screening tool for the identification of arabinofuranose-acting enzymes. Chembiochem : a European journal of chemical biology. 2012 Sep; 13(13):1885-8. doi: 10.1002/cbic.201200394. [PMID: 22887844]
  • Lauren S McKee, Maria J Peña, Artur Rogowski, Adam Jackson, Richard J Lewis, William S York, Kristian B R M Krogh, Anders Viksø-Nielsen, Michael Skjøt, Harry J Gilbert, Jon Marles-Wright. Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains. Proceedings of the National Academy of Sciences of the United States of America. 2012 Apr; 109(17):6537-42. doi: 10.1073/pnas.1117686109. [PMID: 22492980]
  • Nadine Anders, Mark D Wilkinson, Alison Lovegrove, Jacqueline Freeman, Theodora Tryfona, Till K Pellny, Thilo Weimar, Jennifer C Mortimer, Katherine Stott, John M Baker, Michael Defoin-Platel, Peter R Shewry, Paul Dupree, Rowan A C Mitchell. Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proceedings of the National Academy of Sciences of the United States of America. 2012 Jan; 109(3):989-93. doi: 10.1073/pnas.1115858109. [PMID: 22215597]
  • Tomoyuki Konishi, Tsutomu Aohara, Tomohiro Igasaki, Noriko Hayashi, Yasumasa Miyazaki, Akira Takahashi, Hirohiko Hirochika, Hiroaki Iwai, Shinobu Satoh, Tadashi Ishii. Down-regulation of UDP-arabinopyranose mutase reduces the proportion of arabinofuranose present in rice cell walls. Phytochemistry. 2011 Nov; 72(16):1962-8. doi: 10.1016/j.phytochem.2011.07.012. [PMID: 21824632]
  • Alan Cartmell, Lauren S McKee, Maria J Peña, Johan Larsbrink, Harry Brumer, Satoshi Kaneko, Hitomi Ichinose, Richard J Lewis, Anders Viksø-Nielsen, Harry J Gilbert, Jon Marles-Wright. The structure and function of an arabinan-specific alpha-1,2-arabinofuranosidase identified from screening the activities of bacterial GH43 glycoside hydrolases. The Journal of biological chemistry. 2011 Apr; 286(17):15483-95. doi: 10.1074/jbc.m110.215962. [PMID: 21339299]
  • David C Goldstone, Silas G Villas-Bôas, Marisa Till, William J Kelly, Graeme T Attwood, Vickery L Arcus. Structural and functional characterization of a promiscuous feruloyl esterase (Est1E) from the rumen bacterium Butyrivibrio proteoclasticus. Proteins. 2010 May; 78(6):1457-69. doi: 10.1002/prot.22662. [PMID: 20058325]
  • Kentaro Ohyama, Hidefumi Shinohara, Mari Ogawa-Ohnishi, Yoshikatsu Matsubayashi. A glycopeptide regulating stem cell fate in Arabidopsis thaliana. Nature chemical biology. 2009 Aug; 5(8):578-80. doi: 10.1038/nchembio.182. [PMID: 19525968]
  • Katarína Mikusová, Hairong Huang, Tetsuya Yagi, Marcelle Holsters, Danny Vereecke, Wim D'Haeze, Michael S Scherman, Patrick J Brennan, Michael R McNeil, Dean C Crick. Decaprenylphosphoryl arabinofuranose, the donor of the D-arabinofuranosyl residues of mycobacterial arabinan, is formed via a two-step epimerization of decaprenylphosphoryl ribose. Journal of bacteriology. 2005 Dec; 187(23):8020-5. doi: 10.1128/jb.187.23.8020-8025.2005. [PMID: 16291675]
  • M R Vignon, L Heux, M-E Malainine, M Mahrouz. Arabinan-cellulose composite in Opuntia ficus-indica prickly pear spines. Carbohydrate research. 2004 Jan; 339(1):123-31. doi: 10.1016/j.carres.2003.09.023. [PMID: 14659678]
  • Zhaohui Zhao, Yukari Egashira, Hiroo Sanada. Digestion and absorption of ferulic acid sugar esters in rat gastrointestinal tract. Journal of agricultural and food chemistry. 2003 Aug; 51(18):5534-9. doi: 10.1021/jf034455u. [PMID: 12926910]