8-Oxo-dGTP (BioDeep_00000013160)
Secondary id: BioDeep_00001869552
human metabolite Endogenous Volatile Flavor Compounds
代谢物信息卡片
化学式: C10H16N5O14P3 (522.9906626)
中文名称:
谱图信息:
最多检出来源 Mus musculus(blood) 83.33%
分子结构信息
SMILES: C1C(C(OC1N2C3=C(C(=O)NC(=N3)N)NC2=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
InChI: InChI=1S/C10H16N5O14P3/c11-9-13-7-6(8(17)14-9)12-10(18)15(7)5-1-3(16)4(27-5)2-26-31(22,23)29-32(24,25)28-30(19,20)21/h3-5,16H,1-2H2,(H,12,18)(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,17)/t3-,4+,5+/m0/s1
描述信息
8-Oxo-dGTP is considered a potentially dangerous intermediate which promotes AT-to-CG transversions in nucleoside phosphate metabolic pathways (PMID: 9822604). Nudix (nucleoside diphosphate linked moiety X) proteins act as homeostatic checkpoints at important stages in nucleoside phosphate metabolic pathways, guarding against elevated levels of potentially dangerous intermediates (e.g. 8-Oxo-dGTP). NUDT3 (Nudix-type motif 3) is an example of a MutT, or Nudix, protein family member. (Wikipedia). Misincorporation of oxidized nucleoside triphosphates into DNA/RNA during replication and transcription can cause mutations that may result in carcinogenesis or neurodegeneration. The protein encoded by this gene is an enzyme that hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP, 8-oxo-dATP, 2-hydroxy-dATP, and 2-hydroxy rATP, to monophosphates, thereby preventing misincorporation. The encoded protein is localized mainly in the cytoplasm, with some in the mitochondria, suggesting that it is involved in the sanitization of nucleotide pools both for nuclear and mitochondrial genomes. Several alternatively spliced transcript variants, some of which encode distinct isoforms, have been identified. Additional variants have been observed, but their full-length natures have not been determined. (Wikipedia).
8-Oxo-dGTP is considered a potentially dangerous intermediate which promotes AT-to-CG transversions (PMID: 9822604). Nudix (nucleoside diphosphate linked moiety X) proteins act as homeostatic checkpoints at important stages in nucleoside phosphate metabolic pathways, guarding against elevated levels of potentially dangerous intermediates (e.g. 8-Oxo-dGTP). NUDT3 (Nudix-type motif 3) is an example of a MutT, or Nudix, protein family member.
D009676 - Noxae > D009153 - Mutagens
同义名列表
12 个代谢物同义名
({[({[(3S)-5-(2-amino-6,8-dioxo-6,7,8,9-tetrahydro-3H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid; ({[({[(3S)-5-(6,8-dihydroxy-2-imino-3,9-dihydro-2H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonate; ({[(3S)-5-(2-amino-6,8-dioxo-3,7-dihydropurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxyphosphonic acid; 2-Deoxy-7,8-dihydro-8-oxo-guanosine 5-(tetrahydrogen triphosphate); 8-oxo-7,8-dihydro-2-Deoxyguanosine 5-triphosphate; 8-Hydroxy-2-deoxyguanosine 5-triphosphate; 8-oxo-2-Deoxyguanosine 5-triphosphate; 8-oxo-Deoxyguanosine triphosphate; 8-Hydroxy-dGTP; 8-Oxo-dGTP; 8-OH-dGTP; 8-Oxo-dGTP
数据库引用编号
14 个数据库交叉引用编号
- ChEBI: CHEBI:63220
- KEGG: C19967
- PubChem: 135867692
- PubChem: 135398565
- PubChem: 53481005
- HMDB: HMDB0011615
- Metlin: METLIN62384
- MetaCyc: CPD0-1905
- foodb: FDB028320
- chemspider: 35032077
- CAS: 139307-94-1
- PMhub: MS000027568
- PubChem: 135626433
- PDB-CCD: 8DG
分类词条
相关代谢途径
Reactome(0)
BioCyc(0)
PlantCyc(0)
代谢反应
10 个相关的代谢反应过程信息。
Reactome(10)
- Metabolism:
2MACA-CoA + CoA ⟶ Ac-CoA + PROP-CoA
- Nucleotide metabolism:
H2O + XTP ⟶ PPi + XMP
- Nucleobase catabolism:
H2O + XTP ⟶ PPi + XMP
- Purine catabolism:
H2O + XTP ⟶ PPi + XMP
- Phosphate bond hydrolysis by NUDT proteins:
ADP-D-ribose + H2O ⟶ AMP + R5P
- Metabolism:
1-3-oxo-THA-CoA + CoA-SH ⟶ DHA-CoA + propionyl CoA
- Nucleotide metabolism:
H2O + XTP ⟶ PPi + XMP
- Nucleobase catabolism:
H2O + XTP ⟶ PPi + XMP
- Purine catabolism:
H2O + XTP ⟶ PPi + XMP
- Phosphate bond hydrolysis by NUDT proteins:
ADP-D-ribose + H2O ⟶ AMP + R5P
BioCyc(0)
WikiPathways(0)
Plant Reactome(0)
INOH(0)
PlantCyc(0)
COVID-19 Disease Map(0)
PathBank(0)
PharmGKB(0)
1 个相关的物种来源信息
在这里通过桑基图来展示出与当前的这个代谢物在我们的BioDeep知识库中具有相关联信息的其他代谢物。在这里进行关联的信息来源主要有:
- PubMed: 来源于PubMed文献库中的文献信息,我们通过自然语言数据挖掘得到的在同一篇文献中被同时提及的相关代谢物列表,这个列表按照代谢物同时出现的文献数量降序排序,取前10个代谢物作为相关研究中关联性很高的代谢物集合展示在桑基图中。
- NCBI Taxonomy: 通过文献数据挖掘,得到的代谢物物种来源信息关联。这个关联信息同样按照出现的次数降序排序,取前10个代谢物作为高关联度的代谢物集合展示在桑吉图上。
- Chemical Taxonomy: 在物质分类上处于同一个分类集合中的其他代谢物
- Chemical Reaction: 在化学反应过程中,存在为当前代谢物相关联的生化反应过程中的反应底物或者反应产物的关联代谢物信息。
点击图上的相关代谢物的名称,可以跳转到相关代谢物的信息页面。
文献列表
- E S Ershova, E M Jestkova, I V Chestkov, L N Porokhovnik, V L Izevskaya, S I Kutsev, N N Veiko, G Shmarina, O Dolgikh, S V Kostyuk. Quantification of cell-free DNA in blood plasma and DNA damage degree in lymphocytes to evaluate dysregulation of apoptosis in schizophrenia patients.
Journal of psychiatric research.
2017 04; 87(?):15-22. doi:
10.1016/j.jpsychires.2016.12.006
. [PMID: 27987480] - Mark D Evans, Murat Saparbaev, Marcus S Cooke. DNA repair and the origins of urinary oxidized 2'-deoxyribonucleosides.
Mutagenesis.
2010 Sep; 25(5):433-42. doi:
10.1093/mutage/geq031
. [PMID: 20522520] - Marcus S Cooke, Paul T Henderson, Mark D Evans. Sources of extracellular, oxidatively-modified DNA lesions: implications for their measurement in urine.
Journal of clinical biochemistry and nutrition.
2009 Nov; 45(3):255-70. doi:
10.3164/jcbn.sr09-41
. [PMID: 19902015] - Kamil Olejnik, Elzbieta Kraszewska. Cloning and characterization of an Arabidopsis thaliana Nudix hydrolase homologous to the mammalian GFG protein.
Biochimica et biophysica acta.
2005 Sep; 1752(2):133-41. doi:
10.1016/j.bbapap.2005.07.021
. [PMID: 16154395] - Takahisa Ogawa, Yayoi Ueda, Kazuya Yoshimura, Shigeru Shigeoka. Comprehensive analysis of cytosolic Nudix hydrolases in Arabidopsis thaliana.
The Journal of biological chemistry.
2005 Jul; 280(26):25277-83. doi:
10.1074/jbc.m503536200
. [PMID: 15878881]